Acidithiobacillus ferriphilus: K1Y48_04090
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Entry
K1Y48_04090 CDS
T07843
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
afp
Acidithiobacillus ferriphilus
Pathway
afp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K1Y48_04090 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afp03400
]
K1Y48_04090 (recD)
Enzymes [BR:
afp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K1Y48_04090 (recD)
DNA repair and recombination proteins [BR:
afp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K1Y48_04090 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
Helicase_RecD
AAA_22
PhoH
SH3_13
UvrD-helicase
DEAD
nSTAND3
SLFN-g3_helicase
AAA_24
AAA_5
ResIII
Mg_chelatase
NACHT
AAA_28
AAA_16
AAA_18
Motif
Other DBs
NCBI-ProteinID:
UEP59840
LinkDB
All DBs
Position
821408..823348
Genome browser
AA seq
646 aa
AA seq
DB search
MTSAMMDQLRTWTEEGWLRPLDFAFAQFLIRLDPQAPALLPLAGALLARLEGEGHTCVAL
DDFLSAPERLLDWPAPELATLATALGDWPHAAAWTEILAQSLCVQVTERNTFDPANSAET
PLVLSAARLYLRRYWRDQQFIAETLRQRAQQRVADTANPEVLRPWLEQLFPASDEPGDEL
PWQKIACALALRSHFSIITGGPGTGKTYTAARLMALLMATSGDSLRIVLAAPTGKAAVRI
DESLQSAVSALPQLGPRPDMAAAFARLRPARTLHSLLGARPESRRFHHHAANPLELDVLV
VDEASMIHQEMMAALLRALPPTARLILLGDQDQLASVEAGAVLAEICQGSGMYDAETCHY
LQASCGATPQPNDSGTSPLASSIVRLQHSHRFNAEIGALADAVHGGHPETAIRILQSAQT
STLAWQSAPTIHQILDLAGTETAYGRVWQAAGRPPPKDPQQHGAWVKTILKDYADFRILC
ALRQGPWGVTGINRAIEDHLQRQGILQSHGLWYVGRPTLVTRNDPGLGLSNGDIGIALPD
PDRRMRVYFPNSDGPPRAILPSRLNHSESAWAMTVHKAQGSEFAHTVLVLPPEDSPVLSR
ELLYTAITRARTCFTLIAPRARLENAIQRQTRRMSGLHAALRNARH
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgacctcagccatgatggaccaactccgcacctggactgaggaaggctggctacgcccc
ctcgacttcgcctttgcgcagttcctcatccgcctggacccgcaggccccggccctcctg
cccctggctggcgccctcctggcgcgcctcgaaggggaggggcacacctgcgtcgcgcta
gacgacttcctcagcgcgcccgagcgcctcctggactggcccgcgccggagctcgccacg
ctggcgaccgcgctcggtgactggccccacgccgccgcatggacagaaatcctcgcccag
agcctgtgcgtgcaggtcaccgagcgcaacacattcgacccggcaaacagcgcagaaacg
cccctggtcctcagcgccgcccgcctttatttgcgccgctactggcgcgatcagcaattc
atcgccgaaacgctgcgtcagcgtgcccaacagcgtgtcgccgataccgccaaccccgag
gtcttaagaccctggctggagcagcttttcccggcatctgacgaacccggcgatgaactc
ccctggcaaaaaatcgcctgcgccctcgccttgcgcagccacttcagcatcatcaccggc
ggccccggcaccggcaaaacctacaccgcagcgcgccttatggccttgctcatggcgacc
agcggcgactctctgcgcatcgtcctcgccgcccccaccggcaaggccgccgtgcgcatc
gacgaatccctgcagagcgccgtcagcgcccttccgcaactgggcccgcgacccgatatg
gccgccgccttcgcccgcctgcgtccggcgcgtaccctgcatagcctgctcggcgcccgt
cccgaaagtcgtcgctttcaccaccatgccgccaatcccctcgaactcgacgtactggtg
gtggatgaagcctccatgatccatcaagagatgatggccgccctgctccgcgctctgccg
cccacggcccgcctcatcctcctcggcgaccaggaccagctcgcctccgtcgaagcgggc
gccgtgctggccgagatctgccaaggcagcggtatgtacgatgccgagacctgccactat
ctgcaggccagttgtggtgccacaccgcagcccaacgacagcggcaccagcccccttgca
tcaagcatcgtccgcctgcaacacagtcaccgcttcaacgccgaaatcggcgctttggcg
gatgccgtccacggcggtcaccccgaaaccgccatccgcatcctgcaaagcgcgcagacc
agcaccctcgcctggcaatccgcccccaccatccaccagatactggatctcgccggcacc
gagaccgcctatggccgcgtctggcaagcggcggggcggccgccgccaaaagacccgcaa
caacatggcgcgtgggttaagaccatcctcaaggactatgccgatttccgcatcctctgc
gccttgcgccaaggcccttggggcgtcaccggcatcaaccgcgccattgaagaccatctg
caacgccagggcatcttgcagagccacggcctttggtatgtcggtcgccccaccctcgtc
acccgcaacgaccccggcctcggtctcagcaatggcgatatcggcatcgccctgcccgac
ccggataggcgtatgcgcgtctattttcccaacagcgacggcccgccccgcgccatcctg
cccagccgtctcaaccacagtgaaagcgcctgggccatgaccgtccacaaggcgcagggc
tccgagttcgcccacaccgtactcgtcctcccgccggaagacagcccggtgctcagccgc
gaactgctctacacggccatcacccgggcccgcacatgcttcaccctcatcgctccccgg
gcgcgcctggaaaacgccattcaacgccagacgcggcgcatgagcgggctacatgcggct
ttgcgcaacgccagacattga
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