Acidithiobacillus ferriphilus: K1Y48_04730
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Entry
K1Y48_04730 CDS
T07843
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
afp
Acidithiobacillus ferriphilus
Brite
KEGG Orthology (KO) [BR:
afp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afp03032
]
K1Y48_04730 (topA)
03400 DNA repair and recombination proteins [BR:
afp03400
]
K1Y48_04730 (topA)
Enzymes [BR:
afp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K1Y48_04730 (topA)
DNA replication proteins [BR:
afp03032
]
Prokaryotic type
DNA Topoisomerases
K1Y48_04730 (topA)
DNA repair and recombination proteins [BR:
afp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K1Y48_04730 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Motif
Other DBs
NCBI-ProteinID:
UEP59951
LinkDB
All DBs
Position
956218..958722
Genome browser
AA seq
834 aa
AA seq
DB search
MAYQLVIVESPAKAKTIQKYLGDDFQVLASYGHVRDLQPKEGAVDTEHDFAMRYAAIERN
ERHVDAIAKALRGADKLWLATDPDREGEAISWHLVELLRERHLLGNKPAQRVVFHEITKK
AVQEAIATPREIAMDLVNAQQARRALDYLVGFNLSPLLWRKVRPGLSAGRVQSAALRLIC
ERENEIEAFVSREYWTIASRLQQAGSEFTGRLTHWQTKKLEQFDVTNSDQAEAIRSGMEE
DLSRQALRVREVERKSRQRQPAAPFTTSTLQQEASRKLGFNASRTMRVAQQLYEGINIGN
ETVGLISYMRTDAVNLAEEAIASIRDFIGSHYGSEFVPETPRRYKTKTKNAQEAHEAIRP
TDIARSPEALQGVLERDLWRLYDLIWKRSVACQMAPARMDLVAVDMDAGTHWTLRANGST
VTFPGFMAVYQEGKDDGDEDEGNRILPPLDTGDEPQVLGIDSEQHFTDPPPRYSDATLVK
TLEAYGIGRPSTYASIIQTLQNREYVAVEQRRFRPTDLGRVVGRFLTNHFERYVDYGFTA
SMEDELDAISRGEKQWQPVLSAFWGPFRALLDEKANVSRTEATSEALDEACPQCGKPLFL
RLGRHGRFVACSGYPECNYTRPVDGPREPAEPVGRDCPDCGKPLVYKTGRYGRFISCSGY
PECKHIEPLTQPKSSGVICPQCGEGELVEKRSRYGKIFYSCNTYPKCSYAVWGPPIARAC
PRCAWPIMIEKSGKRLGEQLACPQSECAFHFPVNASDAEIAAMLPDYTPPPPREKRAPPA
KKVAPARKATAKKPVKAKTPAAKKTTSSKSTASSASESATPAPRKRAVKNVANS
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcatatcagctcgttatcgttgaatcgccggctaaagccaaaaccatccagaagtat
ttgggggatgactttcaagtgctcgcttcctacggccatgtgcgcgatttgcagcccaaa
gaaggtgctgtagataccgaacatgatttcgccatgcgctacgctgccatcgagcgcaac
gagcgacatgtggacgccatcgccaaggccctgcgtggcgccgacaagctctggctcgct
accgatccggatcgcgaaggcgaggccatctcctggcatctggtggagctgctgcgcgag
cgtcacctgctcggcaacaagcccgcgcaacgtgtcgtcttccacgaaatcaccaaaaaa
gccgtgcaggaagctatcgccaccccccgcgaaatcgccatggatctggtcaacgcccag
caagcgcgccgcgccctcgattatctggtgggcttcaatctgtcgccgctgctctggcgc
aaggtgcgtccgggcctctcggcgggccgggtacaaagtgctgcgctgcgcctgatctgt
gagcgcgaaaatgaaatagaagcctttgtcagccgcgaatactggaccatcgccagtcgt
ctacagcaggccggcagcgaattcaccggccgcctgacccactggcagacgaaaaagctc
gaacagttcgacgtcaccaatagtgatcaggccgaggccatccgcagcggcatggaagag
gatctcagccgccaggcgctacgggtccgggaagtggagcgcaagagccggcaacgccag
cctgccgcacccttcaccacgtccaccttgcagcaggaagcctcgcgcaagctcggcttc
aacgccagccggaccatgcgcgtcgcccagcaactctacgaaggcatcaatatcggcaac
gagactgtgggcctcatcagctacatgcgtaccgacgccgtcaacctcgccgaagaggcc
atcgcttccatccgtgactttatcggcagccactacggcagcgaattcgtccccgagacc
ccgcgccgctacaagaccaagaccaaaaacgcccaggaagcgcacgaagccattcgcccc
acggacatcgcccgcagcccggaggccttgcagggcgtgctcgaacgcgatctctggcgc
ctttatgatctgatctggaagcgcagcgtcgcctgccaaatggcgcctgcgcgtatggac
ctggtcgccgtcgatatggacgccggcacccattggaccctgcgtgccaacggctccacc
gtcacctttcccggcttcatggccgtctatcaggaaggcaaagatgacggtgacgaggac
gaaggcaaccgtattctgccgccccttgataccggcgatgaaccgcaggtgcttggcatt
gattccgagcagcactttaccgacccccccccccgttatagcgatgccaccctggttaaa
accctggaagcctatggcatcggccgtccatccacctatgccagcattattcagaccctg
cagaaccgcgaatatgtcgccgtcgagcagcgccgcttccgccccaccgatctcggacgg
gtggtcggtcgttttctgaccaatcatttcgagcgctatgtggattacggcttcaccgcc
agcatggaagacgaactggacgccatttcccggggtgagaagcagtggcagccggtgctc
agcgcgttctggggaccctttcgcgcactccttgacgaaaaagccaacgtcagccgcacc
gaagccaccagtgaagcactggatgaggcctgtccacaatgtggcaaacccctattcctg
cgcctcggtcgtcatggccgttttgtggcctgttcggggtaccccgaatgtaattatacc
cgcccggtggacggccctcgcgaacccgccgaacccgtaggtcgcgactgcccggattgc
ggtaagccgctggtctataaaaccgggcgttatggccggtttatctcgtgcagtggctat
cccgaatgtaagcacattgagccgctaacccagcctaaatcctcaggagtcatttgcccc
cagtgcggtgaaggcgaactggtggaaaaacgcagccgttacggcaaaatcttctactcc
tgcaacacttaccccaaatgcagctatgcggtctggggacccccgatagcacgcgcctgt
ccccgctgcgcctggccgataatgatcgaaaaaagcggcaagcgccttggtgaacaactc
gcctgtccccaaagcgaatgtgcttttcacttcccggtgaacgccagcgacgcggaaatc
gccgccatgctgcccgactacactccgccgccgccccgcgaaaagcgcgcgccgccggcc
aagaaggtggctcctgcccgtaaagcgacggcgaaaaaaccagtcaaagccaagaccccg
gcggcaaagaaaaccacgtcgtccaaaagtacggcctcatcagccagcgaatcggccacg
cccgcgccacggaagcgcgctgtaaagaacgtcgccaactcatga
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