Acidithiobacillus ferriphilus: K1Y48_12320
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Entry
K1Y48_12320 CDS
T07843
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
afp
Acidithiobacillus ferriphilus
Pathway
afp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1Y48_12320 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afp03019
]
K1Y48_12320 (rnr)
03016 Transfer RNA biogenesis [BR:
afp03016
]
K1Y48_12320 (rnr)
Enzymes [BR:
afp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K1Y48_12320 (rnr)
Messenger RNA biogenesis [BR:
afp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K1Y48_12320 (rnr)
Transfer RNA biogenesis [BR:
afp03016
]
Prokaryotic type
tRNA degradation factors
K1Y48_12320 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
OB_Dis3
AbiEi_4
CSD
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
UEP59052
LinkDB
All DBs
Position
complement(2444983..2447229)
Genome browser
AA seq
748 aa
AA seq
DB search
MPETQEPASLNERDPMFEREKEKYERPIVSREYILSYLEGTGRPLTLEDIIAELEVAEDD
QEALRRRLRAMERDGQLVRNRRGAYGIVAAMELVRGTVSAHPDGFGFLIPEAGGKDLFLS
PREMRKVFHGDTILGRAVGEDRRGRIEGAVVRILERALKHIVGRYYADNGVHYVVPEDRR
IPQEFAVVEGEGEGLTPVHGQIVILEITQYPDGRNMPQGHVVEILGEHMAPGMEVEIAVR
NYGLPHQWPDEVLAEIKQFSETVPETMKAGRRDLRDLPLVTIDGADAKDFDDAVYAEVIE
NGFRLTVAIADVATYVCPDSALDREAVTRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDR
LCMFCEMEMDAAGEVQRFRFDRGIMRSQRRFTYDEVAAILAGDTELRAQDAAMVPHLEAL
HSLYESFAKARERRGTIEFDSQESRIIYNDQLRIEKIVAVTRNVAHRIIEECMLAANVCA
AQFFRIHELPMLYRVHPEPASDKLEDLRRFLGELGVPVHLPAHPRSADLAKIIEDTRERS
DSSLIQTVILRSLSQAYYTVDTGMHFGLAFPAYTHFTSPIRRYPDLVVHRGIQALLDAAG
AEPKWFPKKALQELGQHCSMTERRADEASREAVNWLKCEFMMDKVGETYTGIITGVTGFG
LFVALREIYVEGLIHISTLGEDYFHFDAQHYRIIGDRSKETFQLGDEIEIKVVSVNLDER
KMDFERVMPEGQGGGAAKNRRSRRGKKD
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaacacaagaacctgcatcgcttaatgagcgtgatcctatgttcgagcgggaa
aaagaaaaatatgaacgaccgatcgtcagtcgggagtacattctcagctatctggagggt
accggtcggccactcaccttggaagacattatcgctgaactggaagtcgccgaagatgat
caggaagccttaaggcgtcgtctgcgggctatggaacgagatggccagctggtgcgcaac
cggcgtggtgcctacggcatcgtagcggccatggaactggtgcgcggcacagtgagcgca
catcccgatggttttggcttcctgattcccgaggcgggcggcaaggatcttttcctctcc
ccgcgggaaatgcgcaaggtgttccacggtgataccatcctgggacgggcggtaggagag
gaccggcgcggacgtatcgaaggtgcggtcgtgcgcattttggagcgggcgctcaaacac
atcgtaggccgttactacgccgataacggcgtgcattacgtggtgccggaggaccgtcgt
attccccaggagttcgcagtggtggaaggggaaggggagggactgacaccagtccatggc
cagattgtgattctggagattacccaatatcccgatggccgtaatatgccccaagggcac
gtcgtggaaattctcggtgagcacatggctccgggtatggaagtcgagatcgccgtccgt
aactatggcttgccccatcagtggccagatgaagtgcttgctgaaatcaagcagttctcg
gagacggtaccggagacgatgaaggcgggtcgccgcgatctgcgtgatctgccgctggtc
accattgatggcgctgacgccaaggattttgacgacgcggtctacgccgaggtaatcgag
aatggttttcgcctgactgtcgccatcgctgacgttgccacttatgtgtgcccggactcc
gcactggatagagaggcggtgacccgtggtaattctgtctatttcccgcggcgggtgatt
ccaatgctgcccgagatactgtccaacggactctgctccctcaatcctcatgtggaccgc
ctctgcatgttctgcgagatggagatggacgcggctggcgaagtacagcgtttccgcttc
gaccggggcatcatgcgctcacagcgccgttttacctatgatgaagtggctgccatattg
gcgggggacacggaattaagggcgcaggacgcggccatggtcccgcacctggaggccctg
cacagcctctatgaaagctttgccaaggcccgtgagcggcggggcactattgaattcgac
tcgcaggaaagccgcattatctacaatgatcagttgcgcattgaaaaaatcgtggcggtt
acccgcaatgtcgcgcatcggatcatcgaagaatgcatgctcgcggccaatgtgtgtgca
gcgcaattcttcagaattcacgaactgcccatgctttatcgggtccatccagagcctgcg
agtgataagcttgaagatttgcgccgttttctgggtgagcttggtgtgccggtgcatttg
cctgcccatccgcgcagtgccgatctggcgaaaatcatcgaagatacgcgtgagcgcagt
gattccagtctgattcagaccgttattctgcgcagtctttcacaggcgtactataccgtg
gataccggcatgcatttcggtctggccttcccggcctatacccactttacctcgcccatc
cgccgttatccggatctcgtggtgcatcgcggtattcaggccttgctggatgccgctggt
gcggagcccaagtggttccccaaaaaggcactgcaggaactgggccagcactgttccatg
accgagcgtcgcgccgatgaagccagtcgtgaagcggtaaattggctcaagtgtgaattt
atgatggataaggtaggggagacctatacgggcatcattaccggtgttactggctttggc
ctctttgtggcactgcgggaaatttatgtggagggcctgatccatatcagtaccctcggt
gaagactattttcactttgatgcacagcattaccggattattggcgatcgcagcaaggaa
acattccaactcggcgatgaaatcgaaattaaggtggtgagcgtcaatttggacgagcgg
aagatggatttcgagcgggtgatgccagaggggcagggcggtggcgcggcaaaaaaccga
cgaagccgacgcggcaagaaagactga
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