Alcaligenes faecalis JQ135: AFA_00840
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Entry
AFA_00840 CDS
T05446
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
afq
Alcaligenes faecalis JQ135
Pathway
afq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFA_00840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afq03019
]
AFA_00840
Enzymes [BR:
afq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFA_00840
Messenger RNA biogenesis [BR:
afq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFA_00840
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
P-loop_SecA
AAA_22
GWD1_pHisD
Motif
Other DBs
NCBI-ProteinID:
ASR88123
UniProt:
A0AB33CVU4
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All DBs
Position
complement(192223..193698)
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AA seq
491 aa
AA seq
DB search
MDSQITFASLELAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFT
LPILHRLLNNPQQNRKPGRPRALILAPTRELAAQVEESVRLYSQHTRLRSMVMFGGVNIN
PQFHALRKPLDILVATPGRLLDHVRQRTVDLTGVEILVLDEADRMLDMGFIRDIRKIISL
MPVERQTLLFSATFSDEIRELARSSLNNPVEVAVAARNTTNELITQQVILADQAHKRDLL
SHIIRESSWNQVLVFCRTKHGANRLAEKLSKDGMAAEALHGNKSQAARTRALAGFKNGKV
VVLVATDIAARGLDIDQLPYVVNFELPNVPEDYVHRIGRTGRAGSEGVALSLVDRSEMRL
LKQIERMTRNPIERIVVEGWTPPSRAALAEEAKEDTYAERRFHSAPGPGARAPAGARRTG
GGGGQARSPEGRGGNGESRPRRPGNDNRPRRSAAPGGAGGGAARAGQGRPGGRQDSRGPN
RSNRSAAQAKA
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
ttggactctcaaatcacttttgcctctcttgagctggcagaacctctgttgcgtgctgta
accgacgcaggctatacccaccccacccctattcaggcccaggctatccctaaggtcatt
gaaggtggtgacctgttggccgctgctcaaaccggcactggcaagaccgcaggctttacc
ctgcctatcttgcaccgtctgctgaacaaccctcagcaaaatcgtaaaccaggccgccca
cgtgcgctgatcctggctcctacccgtgaactggccgcccaggttgaagaatcggtacgt
ttgtacagccagcacacccgtctgcgctcgatggtcatgtttggtggcgtgaacatcaac
ccccagttccatgccctgcgcaagccactggacattctggtcgcgacccctggccgtttg
ctggatcacgtgcgtcaacgcacggtagacctgactggcgtggaaattctggtgctggac
gaagccgaccgcatgctggacatgggctttatccgcgacattcgcaagatcatcagcctg
atgcccgttgagcgtcagaccctgctgttctcggctaccttctcggacgaaatccgtgag
ctggcccgcagctcgctgaacaacccggtcgaagtggctgttgctgctcgcaacaccacc
aatgaactgattacccagcaagtgattctggctgaccaggcacacaaacgtgacctgcta
agccacatcatccgcgaaagcagttggaaccaggtgctggtgttctgccgcaccaagcac
ggcgccaaccgtttggccgaaaaactgtccaaagacggtatggcggctgaagccctgcac
ggcaacaagagccaggcggctcgtacccgtgcgctggccggcttcaagaacggcaaggtt
gtggtgctggttgccaccgacatcgccgcacgtggtctggacattgatcaactgccttac
gtggtgaacttcgaactgcctaacgtgcctgaagattacgttcaccgtattggccgtact
ggccgtgccggtagcgaaggcgtggccctgtcgctggtcgatcgcagcgaaatgcgtttg
ctcaagcagatcgagcgcatgacccgcaatcctatcgagcgcatcgtggtggaaggctgg
acgcctccctcgcgtgctgctctggctgaagaagccaaggaagacacctacgcagagcgc
cgtttccacagcgctcctggccctggtgctcgtgctccagcaggtgctcgtcgcacgggt
ggcggtggtggtcaggctcgctcgcctgaaggccgtggtggtaatggcgaaagccgtcca
cgccgtcctggcaatgacaaccgtccacgtcgcagcgccgctcctggtggtgcaggtggt
ggtgctgcccgtgccggtcaaggccgccccggtggccgtcaggacagccgtggcccgaac
cgcagcaaccgcagcgccgcccaagccaaagcctaa
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