KEGG   Alcaligenes faecalis JQ135: AFA_05155
Entry
AFA_05155         CDS       T05446                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
afq  Alcaligenes faecalis JQ135
Pathway
afq03030  DNA replication
afq03410  Base excision repair
afq03420  Nucleotide excision repair
afq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:afq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AFA_05155
   03410 Base excision repair
    AFA_05155
   03420 Nucleotide excision repair
    AFA_05155
   03440 Homologous recombination
    AFA_05155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:afq03032]
    AFA_05155
   03400 DNA repair and recombination proteins [BR:afq03400]
    AFA_05155
Enzymes [BR:afq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     AFA_05155
DNA replication proteins [BR:afq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AFA_05155
DNA repair and recombination proteins [BR:afq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     AFA_05155
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AFA_05155
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_2
Other DBs
NCBI-ProteinID: ASR88887
UniProt: A0AB33CZ39
LinkDB
Position
1136733..1139450
AA seq 905 aa
MKKTLLLVDGSSYLYRAYHAMPDLRNAQGQPTGALYGVINMLRRLLQDYQADYMVCVFDA
KGRTFRDDLYDQYKANRPSMPEDMAEQIEPIHKAVRAMGWHLICQSGVEADDIIGTLSRL
AAENGIETVVSTGDKDLAQLVNEHVQLVNTMSNEKLDIEGVTNKYGVRPDQIIDYLMLIG
DTSDNIPGVPKVGPKTAAKWLGEYGSLDELLQHADKIKGVAGQNLRDFSANFEMTRKLVT
VKLDCEVPGFTGDFGALEPEPRDNAVLQDIYETYGFRSWLRELTDDPKRVPAQDARVQAE
TPAAPAELDYQTVTTKEQLQSLLSLLEKAELVALDTETTSLDPLMARLVGLSVSVKAGQA
FYVPVAHRGSLDVEQLNKDDVLETLRPWLENAEAAKVLHNAKYDTHVLLNEKVSLRGIRE
DTMLQAYVLQSHKRVSMDELALQWLGLKGTSYEDICGKGAKQIGFDEVDIPVASHYACED
ADYTLRLHQCLRPQVAKQEGLERIYLLEVQASDVLTIVERNGVKIDVPTLARQSHELGQK
MLELENKAYELADQPFNMNSPKQVGEILFGKLGIPVVRKTASGAPSTDEDVLTRLAQDYP
LPQVLLEYRGLAKLKSTYTDKLPKMVNPDSGRVHTRYAQAAVITGRLASSDPNLQNIPVR
TAEGRRVRAAFVSELGKVVSADYSQIELRVMAHVSGDANLQQVFEQGGDVHTATAAEIFG
VDAKDVSSDQRRAAKAINFGLIYGMGEFGLASNLGITRDAARAYIDRYFARYPGVASYMT
RIKAQAHEQGYVETVFGRRLWLPELKGAKGPRMAGAERAAINAPMQGTSADLIKMAMVAV
QRWLEEKGLRTQMVMQVHDELVFDVPEDELDILRENLPGLMCNVAKLDVPLVAEVGVGDN
WEQAH
NT seq 2718 nt   +upstreamnt  +downstreamnt
atgaaaaaaaccttgttgctcgttgatggttccagctatctgtaccgagcgtaccatgcg
atgcctgatctgcgaaacgcgcaaggccagcctacaggcgccttgtacggggtcatcaat
atgttgcgccgcctgctacaggattatcaggccgactatatggtatgcgttttcgatgcc
aagggccgcaccttccgggacgatctgtacgatcaatacaaggctaaccggccctccatg
cccgaagatatggcggagcaaatagagcctattcacaaagcggtacgcgccatgggctgg
catctgatttgtcagtccggcgtggaggctgacgatatcatcggcacactttctcgtctg
gcggccgaaaacggtatcgagacggtagtctctaccggagataaggacctggcccagctg
gtcaatgagcatgtgcagctggtcaacaccatgagtaacgaaaagctggatatagagggg
gtcaccaataagtacggagtacgcccagatcagattatcgattatttgatgctgattggc
gacacctcggacaatattccgggcgtacccaaggtgggccccaagacagccgccaagtgg
ttaggtgaatatggcagcctggatgagttgttgcagcatgccgacaaaatcaagggtgtg
gctggccagaatctgcgcgatttcagcgctaactttgaaatgacgcgcaagctggtgacg
gtcaagctcgattgtgaggtgcctggttttacgggtgacttcggtgcgctggagccggag
ccccgtgacaatgccgtgttgcaggatatctatgaaacctatggtttccgcagctggttg
cgtgaattgacggatgatcccaagcgcgtgcctgcccaggatgcacgcgtccaggctgaa
acgcctgcggcacccgctgagctggattatcagaccgtcacgacgaaagagcaattgcag
tccttgctaagcctgctggagaaggccgagctggtggcgctggatacggaaaccacgtcc
ttggaccctttgatggcgcgtttggtgggcttgtcggtgtcggtcaaggcgggccaggct
ttttatgtgccggtcgctcaccgtggttcgctggatgtagagcagttgaataaagacgat
gtgctggaaactctacgtccctggctggaaaacgcagaggcggccaaggtcctgcacaat
gccaaatacgatacgcatgtcctgctcaatgaaaaagtcagcttgcgcggtatccgcgag
gacaccatgttgcaggcgtatgtcttgcagtcgcacaagcgcgtcagcatggatgagctg
gccttgcaatggctgggtttgaaaggcacgtcttacgaggatatttgcggcaagggtgcc
aagcagatcggttttgacgaggtggacatccctgttgcgtctcactatgcctgtgaagat
gcggactacaccttgcgtttgcatcagtgcctgcgtcctcaagtggccaagcaagaaggt
ctggagcgtatttatttgctggaagtgcaggcttcggatgtgctgacgattgtggagcgc
aatggcgtcaagattgatgtgcctaccctggcgcgtcaaagccacgagctgggccaaaaa
atgctggagctggaaaacaaggcttacgagttggccgaccagcctttcaacatgaactcc
cccaagcaagtgggcgagattctgttcggcaagctcggtattccagtggttcgtaaaacg
gccagtggtgctccgtctactgacgaggacgtcctgacccgcttggctcaggattacccc
ttgccgcaggtgctgctggagtaccgtggtctggccaagctcaagtccacttatacggac
aagctgcccaaaatggtgaatccggacagtggccgtgtgcatacccgttatgcacaggct
gccgtgataactgggcgtctggcctcctccgatcctaacttgcagaacattccggtgcgt
acggcagaagggcgtcgtgttcgtgccgccttcgtgtccgagttgggcaaagtggtctcg
gctgactattcccagatcgaattgcgtgtgatggcgcatgtatcgggcgacgccaatttg
cagcaggtctttgagcagggtggggacgtgcacacagcgaccgctgccgagatttttggt
gtggatgccaaagatgttagctctgaccagcgccgtgccgccaaggcgattaacttcggt
ctgatctacggcatgggtgagtttggtctggccagcaacctgggcattacccgtgatgct
gcccgtgcttatattgatcgctacttcgctcgctatcctggcgtggccagctatatgact
cgcatcaaagcccaggctcatgagcaaggttatgtggaaaccgtgtttggtcgccgccta
tggctgccggaactgaaaggtgcaaaagggccgcgcatggccggtgcagagcgtgccgcc
attaatgcaccgatgcagggcacgtcggctgacctgatcaagatggccatggtggctgtg
cagcgttggctggaagaaaagggtctgcgcacgcagatggtgatgcaggtccatgacgaa
ctggtattcgatgtacctgaggacgagctggatattttgcgtgaaaacctgcctggcctg
atgtgcaatgtggccaagctggatgtcccactggttgccgaggtgggggtgggcgataac
tgggaacaggcgcactaa

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