Alcaligenes faecalis JQ135: AFA_07705
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Entry
AFA_07705 CDS
T05446
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
afq
Alcaligenes faecalis JQ135
Pathway
afq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFA_07705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afq03400
]
AFA_07705
DNA repair and recombination proteins [BR:
afq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AFA_07705
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AFA_07705
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
Kinesin
HEM4
DUF87
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
ASR89332
UniProt:
A0AB33CTV7
LinkDB
All DBs
Position
1659090..1661111
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AA seq
673 aa
AA seq
DB search
MKFEPAFQEFPGSSFKLFQPYLPAGDQPAAIEQLVEGIDDGLMYQTLLGVTGSGKTYTMA
NIIARTGRPAIVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPSRDLFIE
KDSSINEHIEQMRLSATKSLLERPDTIIVGTVSCIYGIGNPGDYHAMVLTLRKGDRIARQ
ELLARLVAMQYERNDLDFQRGVFRARGEVVDIFPAENAELALRVSLFDDELEELELFDPL
TGKVVQKLNRFTVFPSSHYVTPRETVLRAIETIKLELRERLEFLTREGHLVEAQRLEQRT
RFDLEMLQELGFCKGIENYSRHLSGAAPGDPPPTLIDYLPRNSLMFIDESHVTIGQLGAM
YRGDRSRKETLVQFGFRLPSAMDNRPLKLEEFERRMPQTVFVSATPAAYEQEHADNVVEQ
VVRPTGLVDPEIEVRPATTQVDDLLGEIKLRTAQQDRVLVTTLTKRMSEDLTDYLSENGI
RVRYLHSDIDTVERAEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRS
ERSLIQTIGRAARNLNGKAILYADRMTDSMRRAIEETERRRAKQIAFNEEHGITPRGVNK
AVRELIDGVVASDPTASLREDVPEALIRDEKAAAREIKRLEKEMMDHARNLEFEQAAAAR
DKLQRLKAKLLMA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgagcctgcctttcaagagtttccagggagttccttcaagcttttccaacct
tatttgcctgctggtgaccagccagcggcaattgagcagttggtcgaggggattgatgac
ggcttgatgtaccagaccctgttgggggtaacgggctcgggcaagacctataccatggcg
aacattattgctcggacagggcgtccggccattgttctggcacccaataaaaccctggcc
gcgcaactgtacgcagagatgcgcgagttcttcccacgcaatgccgtggaatacttcgtc
tcttattacgattactaccagcccgaggcctatgtgccatcgcgcgatctgtttattgaa
aaagactcgtccatcaatgaacacatcgagcagatgcgtttgtcggccaccaaaagcctg
ttggaacgaccggacaccattattgtgggcacggtctcttgcatctacggtattggtaat
cctggcgactaccatgcgatggtgctgacgctacgcaagggcgaccgaatcgctcggcag
gagctgctggcccggctggttgccatgcagtacgagcgcaacgacctggacttccagcgt
ggtgtgtttcgggcccgtggcgaagtggtcgatattttcccggcggaaaatgccgagctg
gccttgcgggtcagtctgtttgatgacgaactggaagagctggaactgtttgatccgcta
actggcaaagtggtgcagaagctgaaccgttttactgtgttccccagttcgcactatgtg
accccccgtgaaacggtgttgcgggcaattgaaaccatcaagctggaactgcgtgagcgt
ctggaatttctgacgcgggaagggcatttggtcgaggcccaacgcctggaacagcgcact
cgttttgatctggaaatgctgcaggagctgggtttttgcaaaggcatcgagaactattcc
cgccacttgtcaggggcggcgcccggcgatccgccaccaacgctgattgattacctgccg
cgtaactccctgatgtttattgatgaaagccacgtcacgatcgggcagttgggagcgatg
taccgtggtgaccgctcgcgtaaagaaacgctggtgcaattcggtttccgcctgccgtcg
gccatggataaccggcccttgaagctggaagagttcgagcgtcgcatgccgcaaaccgtg
ttcgtgtcggccacaccggctgcttacgagcaagaacatgccgacaacgtggtcgagcaa
gtggtgcggcctaccggcctggtggatcccgaaattgaagttcgtcctgccaccacccaa
gtcgatgatttgctgggtgaaatcaagttgcgtacggcgcagcaagatcgtgtgctggtg
acaacgcttaccaagcgtatgtccgaagacttgacggattacttgtccgagaatggcatc
cgggtgcgttacttgcattcggacattgataccgtggaacgggccgagattatccgtgat
ttgcgcttgggcgtattcgatgtgctggtcgggatcaacttgttgcgcgagggcctggac
ttgcctgaagtgtctttggtggccattctcgatgcggacaaggaaggcttcctgcgctcc
gagcgcagcctgattcaaaccataggtcgggcagcgcgtaatctgaacggtaaggccatt
ttgtatgccgacagaatgacagactccatgcgtcgcgctatcgaggaaaccgagcgtcgt
cgtgccaagcagatcgcctttaacgaagagcatggcattacgccgcgcggcgtgaacaag
gcggtacgcgaattgattgacggcgttgtggcttcggatcctaccgccagcttgcgcgag
gacgtgccagaagccttgattcgcgacgagaaggcggcagcacgtgagatcaagcgtctg
gaaaaagagatgatggatcacgcccgtaacctggagttcgaacaagctgcggctgcgcgc
gacaagttgcaaaggctcaaggccaagttgctgatggcgtga
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