Alcaligenes faecalis JQ135: AFA_07785
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Entry
AFA_07785 CDS
T05446
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
afq
Alcaligenes faecalis JQ135
Pathway
afq03410
Base excision repair
afq03430
Mismatch repair
afq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AFA_07785 (recJ)
03430 Mismatch repair
AFA_07785 (recJ)
03440 Homologous recombination
AFA_07785 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afq03400
]
AFA_07785 (recJ)
DNA repair and recombination proteins [BR:
afq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AFA_07785 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AFA_07785 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AFA_07785 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
VRP3
Cwf_Cwc_15
Motif
Other DBs
NCBI-ProteinID:
ASR89346
UniProt:
A0AB33CVQ8
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All DBs
Position
complement(1676597..1678306)
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AA seq
569 aa
AA seq
DB search
MVTPILKNRPAQEAASQALKQAGIHDLMARLLASRGVTDAAQIDPAWRNMIPPNMLTQAR
EAAVLLADAIARRDRMLIIADYDCDGATACAVGLRALRSMGAVVDFLVPNRFETGYGLSP
AVVELAEQHPSGKPDLLITVDNGIASIDGVQAAHMAGMKVLVTDHHLPGDELPDALAIVN
PNQPGCEFPSKNLAGVGVIFYLMLALRAELRQRGVYEANAGPRLNELADLVALGTVADVV
SLDANNRLIVTQGLERMRKGQMQAGLRALFQVAGRDPRQASAFDLGFALGPRINAAGRLA
DMALGIRCLITDDEDEAANLARELEEMNQDRRSIEQSMREEALRAAELAEPDTSATVCVF
HPEWHQGIVGLVASRLKEKYWRPTLAFAQGDEGEIKGSGRSIPDVHLRDALDLVSKRYPG
LILKFGGHAMAAGLTIEEDNYDVFVQAFEEAVQELTGRFQFDPIIETDGSLEPEHINITV
AGILQKQVWGAGFPAPVFRDRFFVRQQRLLKNKHLKLSLERNGEYFDAIWFNRDTLLPEH
IEAAYRLDQNEWNGNVSVQFIIEFAQGQD
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
gtggtcacccctatcctgaaaaaccgtcccgcccaagaagccgccagccaagccctgaag
caggccgggattcacgatttaatggcccgcttgctggcctctcgaggtgtgaccgatgcc
gcccagatcgatccggcctggcgcaacatgattccgcccaatatgctgacccaggcgcgt
gaagccgccgtcttgctggccgatgccattgcccgtcgggatcgcatgctgatcattgcc
gactacgactgtgacggcgctaccgcctgtgccgtgggcctgcgtgcacttcgcagcatg
ggcgctgtcgtggactttctggtgccaaaccgctttgaaaccggctatggcttatcaccc
gccgtggtggaactggctgagcaacacccctcgggcaagccggatctgctgattacggtg
gataacggcattgccagtattgatggcgtgcaagccgcccatatggcgggtatgaaagtt
ctggtcacagaccatcacttgcctggtgatgaattgcccgatgctctggcgattgtgaac
cccaatcagcccggctgtgaattcccctccaagaacctggccggtgtgggcgttattttt
tacctgatgctggctttgcgtgccgagctgcgccagcgcggagtgtatgaagccaacgcc
ggcccacgcctgaacgagctggctgatctggtcgccctgggtactgtggccgacgtggtc
agcctggatgccaacaaccgcctgatcgtcactcaagggctggagcgcatgcgcaagggc
cagatgcaagccggactgcgcgccctgttccaggttgcaggccgcgatccgcgtcaggcc
agcgcctttgatctgggttttgccttgggcccacgcatcaacgccgctggtcgactggcc
gatatggccttgggcatacgctgcctgatcacggacgacgaggatgaagccgccaatctg
gcccgcgaactggaagaaatgaaccaggatcgccgctcgattgagcagtccatgcgcgaa
gaggcgctacgcgcggccgagctggctgaaccggacaccagtgccacggtgtgcgtgttt
cacccggaatggcaccaaggcatcgtcggactggtcgcctcacgtctgaaagaaaagtat
tggcgccctaccctggcctttgcccaaggtgacgaaggcgagatcaaaggttcgggccgt
tctattcccgacgtgcacctgcgcgatgcgctggacttggtctccaaacgctatcccggt
ctgattctgaagtttggtggtcacgccatggcagccggcctgaccattgaagaggacaat
tacgatgtattcgtgcaggcttttgaagaagcagtgcaggaactgacaggccgctttcaa
tttgaccctatcatcgaaaccgacggttcgctggaacctgaacacatcaatattacggtg
gcgggcatattgcaaaaacaagtctggggcgcaggttttccagcgccagtattccgtgac
cggttctttgtgcgccagcagcgcctgctgaaaaacaagcatttgaaactgagcctggag
cgtaacggcgaatacttcgatgccatttggttcaatcgcgataccttgctgcccgagcat
atcgaggcggcttatcgtctggatcagaacgaatggaatggaaacgtcagcgtgcaattc
attattgaatttgctcagggacaagactag
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