Alcaligenes faecalis JQ135: AFA_11705
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Entry
AFA_11705 CDS
T05446
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
afq
Alcaligenes faecalis JQ135
Pathway
afq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFA_11705 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afq03021
]
AFA_11705 (rho)
03019 Messenger RNA biogenesis [BR:
afq03019
]
AFA_11705 (rho)
Transcription machinery [BR:
afq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AFA_11705 (rho)
Messenger RNA biogenesis [BR:
afq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AFA_11705 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
ASR90061
UniProt:
A0AB33CU20
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All DBs
Position
2535008..2536264
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AA seq
418 aa
AA seq
DB search
MHLNELKALHVSQLLEMAATLEIDNANRLRKQELMFAIMKKHAKKGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GMQPEAIKHRIMFENLTPLHPDQPMRLERDIKSEENITGRILDIFSPIGKGQRALIVASP
KSGKTVMMQHMAHAITTNYPEAVMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTIIGTALIETGSRMDEVIYEEFKGTGNCEIHLERRLAEKRIYPAINL
NKSGTRREELLIKPDLLQKVWVLRKFIHGMDEIEAMEFILDKIRATKTNSEFFDMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgaacgaattaaaagctctgcacgtctcgcagctgctagaaatggctgccact
ttggaaatcgacaacgcgaaccgcttgcgcaagcaagagctgatgttcgcgatcatgaaa
aagcacgccaaaaaaggcgagcagattttcggtgacggggtgcttgaagtcctgccggat
ggttttggcttcctgcgttcgccagaaacctcctacctggccagcacagacgatatttat
atctctccctcgcagatacgccgtttcaatctgcacacaggcgactccattgaaggcgaa
gtgcgcacccctaaagacggtgaacgctactttgccctggtcaaggtcgacaaggtcaac
ggcatgcagcccgaggccatcaaacatcgcatcatgtttgagaacttgaccccgctgcat
cctgatcagcccatgcgcctggagcgtgacatcaaaagcgaagagaacatcacaggccgt
atcctggatatcttctcgcctatcggcaagggccagcgcgccctgatcgtagccagcccc
aaatccggtaaaaccgtgatgatgcagcacatggctcacgccatcacgaccaattacccc
gaggccgtcatgatcgtcctgctagtggacgaacgccccgaggaagtgaccgaaatgcag
cgtaccgtacgcggcgaagtggtggcctccacctttgatgaacccgcgacgcgtcacgta
caagtggccgaaatggtgatcgaaaaggccaaacgcctggttgaattgaaaaaagacgtg
gtgatcctgctggactccattacccgtctggctcgcgcctacaacactgtggtccctgct
tcgggcaaggtattgaccggtggtgtagacgccaacgccctgcagcgccccaaacgcttt
tttggtgctgcccgtaatctggaagaaggtggctccttgaccatcatcggtactgccctg
atcgagaccggcagccgcatggacgaagtcatctatgaagaatttaaaggtaccggcaac
tgcgagatccatctggagcgccgcctggccgaaaaacgcatttaccctgccatcaacctg
aacaagtcaggtacacgtcgcgaagaattactgatcaaacccgaccttctacaaaaggtc
tgggttttgcgcaaattcatccacggaatggatgaaattgaagccatggagtttatcctg
gacaaaatccgggcaacaaagaccaactccgaattcttcgacatgatgaagaagtaa
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