Alcaligenes faecalis JQ135: AFA_13185
Help
Entry
AFA_13185 CDS
T05446
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
afq
Alcaligenes faecalis JQ135
Pathway
afq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFA_13185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afq03019
]
AFA_13185
03009 Ribosome biogenesis [BR:
afq03009
]
AFA_13185
Enzymes [BR:
afq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AFA_13185
Messenger RNA biogenesis [BR:
afq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AFA_13185
Ribosome biogenesis [BR:
afq03009
]
Prokaryotic type
rRNA processing factors
AFA_13185
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ASR90325
UniProt:
A0AB33CXL9
LinkDB
All DBs
Position
2847438..2850761
Genome browser
AA seq
1107 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSY
GEERHGFLPFKEVARSYFKEGVDVRSARIQDALVEGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELREAMDQLDIPQGMSIIARTAGIGRSVEELQ
WDLNYLMQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPDIGEILIDTDEIHEQAA
AFMSVVMPDNLHRVKMYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAI
DVNSARSTRGADIEETALRTNQEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHLDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSALH
VLRLLQEEAMKEGTAALHAQVPVDVATFLLNEKRADITKIESRLNIALILIPNKNLETPH
HIIERLRHDDPRLDELRSSYELVQQPEQQDSLVPHRSHEIKPRPEALVKSTTPAQPAPMS
KPAAAAAAASAAASDNKPGLLKRLLSWLSGTPTEPVTEASKSEESKSPSGRRQGRPGQSH
GGRGQGGRGRRQSNRPEAAQEEKASTESTSANTRGRRRNASANNEAASEAPQSTSTTTTP
TTADEGSSNSRNPRNRRGRGRQRREEGSTENVELNKDLNSTAAQPEQAVASIAAASAVAA
TKQEAQKRAEQLAEADNADTGDNSDTETDENSENGALDPERKRRRRRSRRGRRNTDANAV
AENEESSEEGNTSAYVAHATPSFNPAALDAQEQAAAQTAAAEPEQPQAAVEAPAAQEVTA
VAAQEAPAAAEAAQPAQEVVTTQAAAVETASAQEEVAAPAVQAEVAPEAPAAEETVAPVQ
AEAAAEPAKAEIVEAQAEAVETAATPAEAQAVAETPAVEAAPVETVAVETAAAQKETTVP
AAEAAPEAPAAEEAIAPVQAEAAAEPAKAEVTEAPAEAVETAATPAQAQSTTEAPAVEAT
PVETAAAETRVETQTAAAETPAAEQAQKPAAAPLEAVLNAAGIELVETARSATQDDYQPA
PVRLGRPRKQRTAETESSEPLQQVETQ
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcatcaagaagaactacgcgtcgccattgttgac
ggtcaaaaactcattgacctcgacatcgaaacagccgggcgcgaacagcgcaaaggcaat
atttacaaaggggtcatcacccgtatcgaacccggcctggaagcctgcttcgtcagttac
ggcgaagagcgtcacggctttctgcctttcaaagaagtggctcgcagctacttcaaagaa
ggagttgatgtacgcagcgcccgcatccaggacgccctggtcgaaggccaggaactgatc
atccaggttgaaaaagaagagcgtggcaacaagggcgctgccctgaccacctttatttcc
ctggcaggtcgctatctggttctgatgcccaacaaccctcgtgggggtggcgtatcgcgc
cgcgtggaaggcgaagaccgccaggaactgcgcgaagccatggaccagctggatatcccg
cagggcatgagcatcatcgcccgcaccgcaggtatcggccgcagcgtcgaagaactgcag
tgggacctgaactacctgatgcagctgtggaccgccattgacggcgcggcccgcgacaat
gctgcccctatcctgatttatctggaatccagtctggttatccgggcgatacgcgattac
ttctcgcccgatattggcgagatcctgatcgacacggatgaaattcacgagcaggccgcc
gccttcatgagcgtggtcatgcccgacaacttgcatcgcgtgaaaatgtaccgcgatgat
atccccctgttctcgcgctttcagatcgaacaccagatcgaaactgcttactcacgtacc
gtgcaattgccgtcgggtggtgctgtcgttatcgaccataccgaagcgctggttgccatt
gacgtgaactcggcccgctccacgcgtggtgccgatattgaagaaaccgccctgcgcacc
aaccaagaagccgccgacgaagtggcccgccagttgcgtttgcgtgacttgggtggcctg
attgttatcgatttcatcgatatggaagacagcaagaaccagcgtgctgtcgaacaacgc
ctgcgtgacgccctgcacctggatcgtgctcgtgttcagatgggcaagatctcgcgcttt
ggcctgatggaactgtctcgtcagcgcctgcgccctgccctgaacgaaggctctcacatc
acgtgcccacgatgcaccggtaccggcgtaattcgcgatgctgaatccagcgccctgcat
gttctgcgcctgctgcaagaagaagccatgaaagaaggcactgccgccctgcacgctcaa
gtgccggtggacgtggctactttcttgctgaacgaaaagcgcgctgacatcaccaaaatc
gaatcgcgtctgaacatcgccctgatcctgattcccaacaagaatctggaaaccccgcac
cacatcatcgagcgcctgcgccacgatgacccacgcctggacgaactgcgcagcagctac
gagctggttcagcagcccgaacagcaagacagcctggtgccgcaccgcagccacgaaatc
aagcctcgtccagaagccctggtcaaaagcaccacgccggcccagcctgctcccatgagc
aagccagctgctgctgccgcagccgccagcgccgctgccagcgacaacaaacccggcctg
ctcaaacgtttgctgagctggttgtccggcacacccacggagcccgtgaccgaagccagc
aaatccgaagagagcaaatctccttccggtcgccgccaaggccgtccaggccaatcccac
ggtggccgtggtcaaggtgggcgtggtcgtcgccagtccaaccgcccggaagcagctcag
gaagaaaaagccagcacggaaagcaccagcgcgaatacccgtggtcgccgccgcaatgcc
tcggccaataacgaagccgcctcggaagccccgcaaagcaccagcacgactacgacgcct
accaccgcagacgaaggcagcagcaacagccgcaacccacgtaaccgtcgaggccgtggc
cgtcaacgccgcgaagaaggcagcacagaaaacgtcgagctgaacaaagacctcaacagc
accgccgcccagcccgaacaggctgttgccagcattgccgcagcctctgctgttgccgcc
accaagcaagaagcacaaaaacgtgctgaacagttggctgaggccgacaacgctgatacc
ggcgacaactcggatactgaaacggacgaaaacagcgagaacggcgccctggatccagag
cgcaaacgtcgccgtcgtcgtagccgtcgtggtcgtcgcaacacagacgccaacgcagtg
gccgaaaacgaagagagcagcgaagaaggcaataccagcgcctacgttgctcacgcaaca
cccagctttaaccccgctgccctggatgcccaggaacaagccgctgcccaaaccgcagca
gccgagcctgagcagccccaagcagccgtagaggcaccagcagcccaagaagtgacggct
gtcgccgctcaggaagctccagccgctgccgaagctgcacaacctgctcaagaagtcgtc
acgactcaagcagccgcagttgaaaccgcctcagctcaggaagaagtagccgctccagcc
gttcaggccgaagttgctccagaagctcctgctgctgaagaaactgttgctcctgtgcaa
gcagaagctgctgccgaacctgcaaaagcagaaatcgttgaagctcaagccgaagccgta
gaaacagctgcaactccagcagaagcccaagccgtggcagaaaccccagccgttgaagct
gctccagtggaaactgtcgccgtcgaaaccgctgctgctcagaaagagacaactgttccc
gccgccgaagccgctccagaagctcctgcagctgaagaggccattgctcctgtacaagca
gaagctgctgccgaaccagccaaagcagaagtcaccgaagctccagctgaagccgtagaa
acagccgcgactcctgcacaagcccagtccacaactgaagccccagccgttgaagccact
ccagtggaaactgcagccgcagagactcgcgtagagactcaaaccgctgccgcagaaact
cctgccgccgaacaagcacagaagcccgctgccgctcctctggaagccgtactgaacgcc
gcaggcatcgaactggtggaaaccgctcgctcggcaacacaggacgactaccagcctgca
ccagtgcgcctaggtcgcccacgcaagcaacgtactgcagaaaccgagagcagcgaaccg
ctgcaacaggtcgaaacgcagtaa
DBGET
integrated database retrieval system
