Alcaligenes faecalis JQ135: AFA_13475
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Entry
AFA_13475 CDS
T05446
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
afq
Alcaligenes faecalis JQ135
Pathway
afq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFA_13475 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afq03019
]
AFA_13475 (pnp)
03016 Transfer RNA biogenesis [BR:
afq03016
]
AFA_13475 (pnp)
Enzymes [BR:
afq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AFA_13475 (pnp)
Messenger RNA biogenesis [BR:
afq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AFA_13475 (pnp)
Transfer RNA biogenesis [BR:
afq03016
]
Prokaryotic type
tRNA degradation factors
AFA_13475 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
KH_KhpA-B
LcnG-beta
KH-I_KHDC4-BBP
DUF5813
TMP-TENI
Motif
Other DBs
NCBI-ProteinID:
ASR90378
UniProt:
A0AB33CUU7
LinkDB
All DBs
Position
complement(2913556..2915694)
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AA seq
712 aa
AA seq
DB search
MFNKVTKSFQYGEHTVVLETGEIARQASGAVLVSIEDTVVLATVVGKSEAKAGQDFFPLT
VDYVEKTYSAGKIPGGFFKREGRQSEREILISRLIDRPLRPLFPEGFYNEVQVIIHTVSV
NPEIDPDIAAMIGASAALAISGIPFNGPVGAARVGYVDGQYVLNPSATQLKSSALDLVVA
GTEQAVLMVESEAKQLSEEIMLGGVVFAHEQMQAAINCIHELVEEAGKPEWDWQPAAVNE
SLLASVTAAAEEGLTQAYQTREKQARTEQVRAVYAQVKETVKAQAEAAGQALPDMVAVEN
MMFDLESKIVRSRILSGESRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVTT
LGTKQDEQIIDSIMGEYRDRFMMHYNMPPFATGEAGRFGAPKRREIGHGRLAKRALTPLL
PAAEDFQYSIRVVSEITESNGSSSMASVCGGSLSMMDAGVPVQDHVAGVAMGLIKEGNKF
AVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGITKEIMQVALAQAHEGRMHILG
KMKESIDGSRTEMSEFAPRMLTVKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI
TIASADLDKAREAERRIKELTAEVEVGQEYEGPVMRLLDFGAIVQVLPGRDGLLHISEIA
NYRIANINDVLKVGQVVKVKVIEADEKGRLRLSIKAIGGIEAQGGPAAPAAS
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaagtcaccaagtctttccagtacggcgaacataccgtcgttctggaaacc
ggcgaaatcgcacgtcaggcgtcaggtgccgtgctggtttcgattgaagacacggttgtg
ttggccactgttgttggcaaaagtgaagcgaaagcaggtcaggattttttccctctgacc
gttgattacgtcgaaaaaacctactccgctggcaagatccctggtggtttcttcaagcgt
gaaggccgtcagtccgagcgcgaaatcctgatctctcgcttgatcgaccgcccactgcgc
cctctgtttcctgaaggcttctacaacgaagttcaggtcattattcacacggtatcggtc
aatcccgaaattgatcctgatatcgctgccatgattggtgcctcggctgccctggctatt
tccggcattcctttcaacggtcctgtgggcgctgctcgcgtgggttacgttgatggccag
tacgtgctgaacccatccgccactcagctgaaatcctcggctctggatctggttgtggcc
ggtaccgaacaagctgtgctgatggttgagtccgaagccaagcaattgtctgaagagatc
atgctgggtggtgtggtgtttgctcacgagcaaatgcaagcagccatcaactgcattcac
gaactggttgaagaagctggcaagcccgagtgggattggcagcctgccgcagttaacgaa
agcctgctggcttcggtaaccgctgccgctgaagagggcctgacacaagcctaccaaact
cgcgaaaaacaggctcgtaccgagcaagtgcgcgctgtttacgctcaagttaaagaaacg
gtcaaggctcaagctgaagccgccggtcaggccttgcctgatatggttgccgtcgaaaac
atgatgttcgacctggaaagcaagatcgtgcgttcgcgcatcttgagcggtgagtcccgt
attgacggtcgcgacacccgtaccgttcgtcctatcagcatccgtctgggcgttctgcct
cgtgctcacggtagcgccttgttcacgcgtggcgaaactcaggctttggtggtgaccacc
ctgggtaccaagcaagacgagcagatcattgattcgattatgggcgagtaccgtgatcgc
ttcatgatgcactacaacatgcctccgttcgccaccggcgaagctggccgtttcggcgct
cccaagcgtcgtgaaatcggtcacggtcgtctggccaagcgtgctttgactcccttgctg
ccagccgctgaagatttccagtactccatccgcgtggtgtccgagatcactgaatctaac
ggttcctcctccatggcatccgtgtgtggtggctctctgtccatgatggatgctggtgtg
cctgtgcaggatcacgtggctggtgtggccatgggtctgatcaaggaaggcaacaagttt
gctgtgctgactgacattctgggtgacgaagatcacctgggcgatatggacttcaaggtt
gccggtaccgagaaaggtattactgctttgcagatggacatcaagatccagggcatcacc
aaggaaatcatgcaggttgcattggctcaggctcacgaaggccgtatgcacatcctgggc
aagatgaaagaatccatcgacggttcccgtaccgagatgtccgaattcgcgcctcgcatg
ctgaccgtgaagatcaaccccgagaagattcgtgacgtgattggtaaggggggtgccacc
atccgcgccctgaccgaagaaaccggtacacagatcgatatttcggatgacggcaccatc
actatcgccagcgccgatctggacaaggcccgcgaagccgagcgtcgtatcaaagaactg
accgccgaagttgaagtgggtcaggaatacgaaggccccgtgatgcgcttgctggacttt
ggtgcgattgtgcaagtgctgccaggccgtgatggcttgctgcatatctccgagattgcc
aactaccgtatcgccaacatcaatgacgtgctgaaagtgggtcaggttgttaaggtcaag
gtcatcgaagctgacgagaaaggtcgtctgcgtctgtcgatcaaggcaatcggcggtatt
gaagcccaaggcggcccagccgctcctgctgcttcctga
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