Alcaligenes faecalis JQ135: AFA_14385
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Entry
AFA_14385 CDS
T05446
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
afq
Alcaligenes faecalis JQ135
Pathway
afq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFA_14385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afq03019
]
AFA_14385
Enzymes [BR:
afq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFA_14385
Messenger RNA biogenesis [BR:
afq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFA_14385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
AAA_19
LBP_BPI_CETP_C
Motif
Other DBs
NCBI-ProteinID:
ASR90540
UniProt:
A0AB33CVH3
LinkDB
All DBs
Position
complement(3125529..3126896)
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AA seq
455 aa
AA seq
DB search
MTDKTPSTPNDLTFADFGLHPGILNAVTEAGYSKPTPIQAEAIPVVLAGRDVMGAAQTGT
GKTAAFSLPILNRLMAHATTSASPARHPVRALVLTPTRELADQVAESIALYSKSVPLRST
VVFGGVDIGPQKEALRRGVEIVIATPGRLLDHIDQRTINLSQVSMLVLDEADRMLDMGFL
PDLDRIVSMLPKSRQGLLFSATFSKEIRKLARNFLNDPVEIEVAARNATASNVTQVVYPM
SADEKRRAVAHLIKTKKLTQTIVFSNTKIGAGQLARYLEREGIKAESIHGNKSQLERMKV
LDAFKSGTVDVLVATDVAARGLDVAGMPCVINVDLPYNAEDYVHRIGRTGRAGASGEAIA
LMAPDEEHLLQDIEKLIGTVVPRLKLDLPSTASSPRSGPKRHERRSYQSNTPPVDDFFLK
PYEPSTAAAPKPAVTSSSNTTRKRSVGVLLGGGRY
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgacagataaaactccttcgactcccaatgaccttacgtttgctgatttcggtctgcac
cctggaatattaaatgccgtcaccgaggcgggatattccaagcctacgcctattcaggcc
gaggccattcccgtggtgctggctggccgtgatgtcatgggggcagcccagactggtaca
ggtaagacggcagccttttctttgcctatcctgaatcgtctgatggcacacgccacgacc
agcgcttctcccgctcgtcacccggtgcgggcgttagtgctgacgccaacacgcgagttg
gccgaccaggtggctgagagcattgcgctctatagcaaatcggtcccgctgcgctcgacg
gtggtatttggtggcgtggatatcggaccacaaaaagaagccctgcgacgcggcgtggag
attgtcatcgcgaccccgggccgtctgctcgatcatattgatcagcgcaccatcaattta
agccaggtcagcatgctggtgctggacgaagcagaccgcatgctggacatgggctttttg
cccgatctggaccgtattgtttccatgctgccgaaaagccgtcagggcttgttgttctcg
gcgacgttcagcaaggaaattcgtaagctggcccgtaacttcctgaatgatccggtcgag
attgaagtggccgcccgcaacgcgaccgcctcgaatgtgacccaggtggtataccccatg
tcagcagacgagaagcgtcgtgccgtggcgcatctgatcaagaccaagaagttgacgcaa
accatcgttttttccaataccaagattggtgctggtcaactggcacgctatctggaacgt
gaaggcatcaaggcggaatccattcatggcaacaaaagccagctggaacgcatgaaagtg
ctggacgccttcaagagcggcaccgtggatgtattggtggcaaccgacgtggccgctcgt
ggtctggatgtggccgggatgccttgtgtgatcaatgtggacctgccgtataacgccgag
gactacgtccatcgtattggtcgtaccgggcgtgctggtgcctcgggggaggcgattgcc
ttgatggcccccgatgaagagcatctgttgcaggacattgaaaaattgattggcaccgtt
gtgccacgtctgaagctggatctgccgtcaacggcttcgtcgccccgttccggccccaag
cgccatgagcgtcgttcgtatcagtcaaacacgccaccggtggatgattttttcttaaag
ccttacgagccatcgaccgctgcggcgcccaagccagcggtaacgtcttcttccaacaca
acgcgcaagcgttcggtgggtgtccttttaggcggcggccgctactaa
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