Alcaligenes faecalis JQ135: AFA_15685
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Entry
AFA_15685 CDS
T05446
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
afq
Alcaligenes faecalis JQ135
Brite
KEGG Orthology (KO) [BR:
afq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afq03016
]
AFA_15685
Enzymes [BR:
afq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AFA_15685
Transfer RNA biogenesis [BR:
afq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AFA_15685
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Gene cluster
GFIT
Motif
Pfam:
RNB
UPF0158
Motif
Other DBs
NCBI-ProteinID:
ASR90772
UniProt:
A0A9N7DIW8
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Position
3417587..3419476
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AA seq
629 aa
AA seq
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MYVLFEDSGNFKAEKIFSDSDTTMQVESASGKRSKIKKNSVLFTFEQPGPAELLEKAQAL
AESLDINFLWECAPQDEFEASTLAQEYFGHAPNAIEKTGTLFALHSAPAYFHRRGKGLYR
PAPPEILQAALAAIEKKRLQQEQIQTWAEQMIKGELPPEIAQKASTFLTQPDKNTLEWKA
FDQAQKELGVSTEKLLLSLGAWSNPLTLHQHRFLAAHFPKGTGFPHISLQDWGQDLPEAN
VTAYSVDDANTIEIDDALSVQHPEPGRLRVGVHIAVPSLAMTRGNEIDQIARNRMATVYT
PGHKIPMLPPELIARFSLDQGQTRPTLSLYVDADISTGEILSHQTRLERITVAGNLRQHE
LDPLISEAALADENAELPYEQWLRPLWNFSRQLSAQREAVRGKPENNNRVEYSFELDGPH
DDPNSIIRLVPRVRNAPLSLLIAEYMILANQLWGGLLAEHNVPGIYRSQQFMRTRMSTTP
GPHESIGVPQYIWSTSPLRRYVDLINQGQILAAAEHGISARLAAPFQPKDADLYAIIGAF
ESQYTQWSDYQSSLERFWCLRWLQQNDIKQVQASFIKEDLVRLTNVPLVLHVPGLPTLER
GQEVTLDLLSFDELALTVEARLRSVATAD
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtcctttttgaagacagcggtaatttcaaagcagaaaaaatcttttctgacagc
gataccaccatgcaggtggaatccgcgtctggcaaacgcagcaaaatcaagaaaaacagc
gttctatttaccttcgagcagcccggcccggcagaactgctggaaaaagcccaggcactg
gccgaatccctggatatcaactttttgtgggaatgcgcccctcaggacgaatttgaggcc
tccacgctggcacaggagtattttggccacgcacccaacgctatcgaaaagaccggcacc
ctctttgccttgcatagtgcgcccgcctacttccaccgtcgtggcaagggactgtatcgc
cccgcccctccggaaattttgcaagctgccctggctgccattgagaaaaagcgcctgcag
caagagcaaatccagacctgggccgaacagatgatcaagggcgaactgccgcctgaaatc
gctcagaaggccagcaccttcctgacccagccagacaagaacacactggaatggaaagcc
tttgaccaggcccagaaagaattgggtgtcagcacggaaaagctgctgctatcgctgggt
gcctggtccaatccgctgaccttgcatcaacatcgctttctggccgcgcatttccccaaa
ggcacgggctttccccatatttccctacaagactggggacaggatctgcccgaggccaat
gtcaccgcttattcagtggacgacgccaatacgattgaaattgacgatgccctgtccgtc
cagcatccagaaccggggcgcctgcgtgtcggggttcacatcgctgtgccttcactggcc
atgacacgcggcaacgagatcgaccaaattgcccgcaatcgcatggctacggtgtacacg
ccaggccataagattcccatgctgccgcccgaactgatcgcgcgtttctcgctggatcaa
ggccaaactcgccctaccctttcgctgtatgtagatgcggatatcagcaccggcgaaatc
ctgtcacatcagacccgtctggaacgcattactgtggcgggcaacttgcgtcagcatgaa
ctggacccactgatcagcgaagcagccctggccgacgaaaacgccgagctgccttacgaa
caatggctgcgccccctgtggaacttctcacgccaattatcggctcagcgtgaagcggta
aggggtaagccagaaaacaataaccgggtcgagtacagcttcgagctggatggcccgcac
gacgatcccaactccatcattcgcctggtacctcgtgtgcgcaatgcgccgctaagcctg
ttgattgctgaatacatgattctggccaatcagttgtggggcggcttgctggccgagcac
aatgtacctggcatctatcgctcccagcagttcatgcgtacccgcatgtccaccacgccc
ggcccgcacgaatccattggtgtgccgcaatacatctggtccacctcgcccctgcgccgt
tatgtggacctgatcaaccagggccagattctggcggctgccgagcacgggatctctgca
cgtctggcggccccctttcagcccaaagatgcggatttgtacgccatcattggggccttt
gaatcgcaatacacccagtggtcggactaccagtcctctctggagcgcttctggtgcctg
cgctggctgcaacaaaacgacatcaaacaggtccaggccagcttcatcaaggaagatctg
gtgcgcctgaccaatgtgccactcgtgcttcacgtacctggcctgcccacgctggaacgt
ggccaggaagtcacgctggatctgttgtctttcgacgaactggctttgacggtagaagcc
cgcttgcgctcggtcgccacggcggactga
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