Alcaligenes faecalis JQ135: AFA_18350
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Entry
AFA_18350 CDS
T05446
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
afq
Alcaligenes faecalis JQ135
Pathway
afq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFA_18350 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afq03021
]
AFA_18350 (rpoC)
03400 DNA repair and recombination proteins [BR:
afq03400
]
AFA_18350 (rpoC)
Enzymes [BR:
afq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFA_18350 (rpoC)
Transcription machinery [BR:
afq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFA_18350 (rpoC)
DNA repair and recombination proteins [BR:
afq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFA_18350 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
PaaX
Motif
Other DBs
NCBI-ProteinID:
ASR91261
UniProt:
A0AB33CXZ2
LinkDB
All DBs
Position
complement(4016963..4021228)
Genome browser
AA seq
1421 aa
AA seq
DB search
MKALLDLFKQVTQDEQFDAIKIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVSKVRRERMGHIELACPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFHALM
GAEAVRELLRTIDIDREVERLRAELKATGSDAKIKKISKRLKVLEGFQKSGIKADWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLELMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYATRELVNGKGEGLFMADVAEVQRAYDNK
EVELQTRLTVRIEEFEKGEDGEWVKTIKRYETTAGRALLSEILPKGMPFTALNRALKKKE
ISRLINQSFRRCGLRATVIFADKLMQSGFRLATRGGISIAMNDMVVPAVKESILAQASNE
VKEIDKQYSSGLVTAQERYNNVVDIWGKAGDRVGKAMMEQLASEPVTNRFGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTKGGYTMKAILDGGEVIEPLRDLIL
GRVASTDIVNPDNQELVIPAGTLLNEDLVELIDNLGIDEVKIRTPLTCETRHGLCASCYG
RDLGRGTLVNRGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAALASSVETKTAGTVGF
EIGLRYVTNAKGERVAISRSGEIVIFDDNRRERERHKVPYGATITVGDGDAIKAGQRLAS
WDPLTRPIVSEYTGTVRFENIEEGVTVARQVDEVTGLSTLVVITPKTRGGKITMRPQIKL
LNEQGQEIKIAGTDHMVNISFPVGALITVRDGQQVSVGEILARIPQESQKTRDITGGLPR
VAELFEARSPKDAGLLAEVTGTVSFGKDTKGKQRLVITDLDGVSHEFLIPKEKQVLAHDG
QVVNKGEMIVDGPADPHDILRLKGIEKLANYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTSFITGEQVERSELLNENDRVLAENGIPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGMAFHAARKEKEAFEVAERK
AARELENPFAAAPEPSEDPVFVSGASESEQAQPEAPEGDQE
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgatctctttaaacaagtcactcaggacgagcagttcgatgccatc
aagatcggcatcgcctcgcccgagaaaatccggtcctggtctttcggtgaagtccgcaag
ccagagaccatcaactatcgtacgttcaaacccgaacgcgatggtctgttttgcgccaag
atttttggtcccatcaaggactacgaatgcttgtgtggcaaatacaagcgcctgaaacat
cgtggcgtcatctgcgagaagtgtggtgttgaagtcaccgtctccaaggtgcgtcgcgag
cgcatgggtcacattgaactggcctgcccggttgctcacatctggttcctgaagagcctg
ccatcccgtctgggcatggtgcttgacatgaccctgcgtgacatcgagcgcgtactgtac
tttgaagcctggtgcgtgatcgaacctggtatgaccccgctcaagcgcggtcagatcatg
tccgatgatgatttcctggccaagaccgaagaatacggtgatgacttccacgccctgatg
ggcgcggaagcggtgcgcgaattgctgcgtacgatcgacatcgatcgcgaagtcgagcgc
ctgcgcgccgaactgaaagccactggctcggatgccaagatcaagaagatctccaagcgt
ctgaaagtactggaaggcttccagaaatccggcatcaaggcagactggatgatcatggaa
gtgctgcccgtgctgccaccggacttgcgtccgctggtgccactggacggcggccgcttt
gcgacttccgacctgaacgatctgtaccgccgcgtgatcaaccgtaataaccgtttgaag
cgtctgctggaactgaaggctccggacatcatcttgcgcaacgaaaaacgtatgctgcaa
gagtccgtggactccttgctggataacggtcgtcgcggtaaagccatgaccggcgccaac
aagcgtcaactgaagtccttggccgacatgatcaagggcaagagcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactctggtcgttccgtgattgtggtgggtcctcag
ttgaagctgcaccagtgtggtctgcctaagctgatggcgctggaactgttcaagcccttc
atcttcaaccgtctggaattgatgggtctggctacgaccatcaaggcggccaagaagttg
gtggaaagccaggaaccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtcatgctgaaccgtgcaccgacgctgcaccgtttgggtattcaggcttttgaaccggtc
ctgatcgaaggtaaagcgattcagctgcaccccttggtgtgtgccgcctttaacgctgac
tttgacggtgaccagatggccgttcacgtgccgctgtcgctggaagcccagctggaagcg
cgcaccctgatgctggcctcgaacaacgtgctgttccccgccaacggcgaaccatccatc
gttccttcccaggatatcgtgttgggtctgtactatgcgacccgcgaactggtaaatggc
aagggcgaaggtctgttcatggccgatgtggccgaagtccagcgcgcctacgacaacaag
gaagtcgagctgcaaactcgtctgaccgtccgtatcgaagaattcgagaagggcgaagac
ggtgagtgggtcaagaccatcaagcgttacgaaacgacggctggccgtgccttgttgtcc
gaaattctgcccaagggcatgcctttcaccgcactgaaccgtgcgttgaaaaagaaagaa
atttcgcgtctgatcaaccagtccttccgtcgctgtggcctgcgtgccaccgtgattttt
gcggacaagttgatgcagtccggtttccgtctggcaacacgtggtggtatttccatcgcc
atgaacgacatggttgtgcctgccgtcaaggaaagcatcctggcccaggcaagcaatgaa
gttaaagaaatcgacaagcagtactcctccggtctggtgacggctcaggaacgctacaac
aacgtggtggacatctggggcaaagccggtgaccgcgtgggtaaggccatgatggagcaa
ctggcttccgagccagtgaccaaccgttttggtgaagaagtacgccaagagtccttcaac
tccatctacatgatggcggactccggtgctcgtggttcggctgcacagattcgtcagctg
gctggtatgcgtggtctgatggccaagccagatggctccattattgaaacgcctattacc
gcgaacttccgtgaaggtctgaacgtactgcagtactttatttcgactcacggtgctcgt
aagggtctggctgatacggccttgaagacggcaaactccggttacctgactcgtcgtctg
gtcgacgtgactcaagatctggtcattaccgaagacgattgcggtaccaagggcggctac
accatgaaagccatcctggatggtggtgaggttatcgagcccctgcgcgatctgattctg
ggtcgtgtggcctcgaccgacatcgtcaaccctgacaaccaggaactggttatccccgcc
ggcaccttgctgaacgaggatctggtcgagttgatcgacaacctgggcattgatgaagtc
aagatccgtactccgctgacttgcgaaacccgtcatggcttgtgcgcaagctgctacggt
cgtgatctgggccgcggtacgctggtcaatcgtggtgaagctatcggtgttatcgcggct
cagtccatcggtgaaccgggtacccagttgaccatgcgtacgttccacattggtggtgcc
gcttcgcgtgctgcactggcaagttcggtcgaaaccaagacggcaggtacggtcggtttt
gaaatcggtctgcgctatgtgaccaacgccaagggcgaacgtgttgcgatctcccgttcc
ggcgaaattgtcatttttgacgacaatcgtcgcgagcgcgaacgtcacaaagtgccttac
ggtgccaccattacggtcggtgatggtgatgcgatcaaggctggccagcgtctggcaagc
tgggatccgctgacccgtcctatcgtgtccgagtacaccggtacggttcgcttcgagaat
atcgaagagggcgtaaccgtggctcgtcaggtggacgaagtgaccggcctgtcgactctg
gttgtgatcacacccaagacacgtggtggcaagatcaccatgcgtcctcagatcaagctg
ctgaacgaacagggtcaggagatcaagatcgcgggtaccgatcacatggtcaatatctcc
ttcccagtgggcgccctgattaccgttcgtgacggtcagcaagtgtccgtgggtgagatt
ctggcgcgtattcctcaggaatcgcaaaagactcgggatattactggtggtctgccacgt
gtggccgaactgttcgaagctcgttcgcccaaggatgccggtctgctggccgaagtcacg
ggtacggtttccttcggtaaagacaccaagggcaaacagcgtctggtcattactgacctg
gacggcgtcagtcacgaattcctgattccgaaggaaaaacaggttctggctcacgacggt
caagtggtgaacaagggcgagatgattgtggacggcccggccgatccgcacgacatcctg
cgcttgaagggtatcgagaaactggccaactacattgttaacgaagtgcaggacgtttac
cgtctgcaaggtgtgaagatcaacgacaagcacattgaagtgattgttcgtcagatgctg
cgccgcgtgaacattgtggatgccggtgataccagcttcatcacgggtgaacaggttgaa
cgctccgaactgctgaacgagaacgatcgcgtcctggctgaaaacggtattcctgctacg
tacgaaaacgtgctgctgggtattaccaaggcctcgctgtcgaccgactccttcatctcg
gcggcttccttccaggaaaccacccgcgtgttgaccgaagcggccatcatgggcaaaacc
gacgatctgcgtggtctgaaagaaaacgtgatcgtgggccgtctgattcctgctggtacc
ggtatggctttccatgctgctcgcaaggaaaaagaagcctttgaagtggcagagcgcaaa
gcagcccgtgaactggaaaacccgttcgcagcggctcctgagccttcggaagaccccgtc
tttgtgtcgggtgcctctgagtccgagcaggcgcaacctgaagccccagagggcgatcag
gaataa
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