Acidithiobacillus ferrooxidans ATCC 23270: AFE_0003
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Entry
AFE_0003 CDS
T00810
Symbol
gyrB
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
afr
Acidithiobacillus ferrooxidans ATCC 23270
Brite
KEGG Orthology (KO) [BR:
afr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afr03032
]
AFE_0003 (gyrB)
03400 DNA repair and recombination proteins [BR:
afr03400
]
AFE_0003 (gyrB)
Enzymes [BR:
afr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
AFE_0003 (gyrB)
DNA replication proteins [BR:
afr03032
]
Prokaryotic type
DNA Topoisomerases
AFE_0003 (gyrB)
DNA repair and recombination proteins [BR:
afr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AFE_0003 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ACK78623
UniProt:
B7J3A5
LinkDB
All DBs
Position
2237..4639
Genome browser
AA seq
800 aa
AA seq
DB search
MMETYDSSSIQVLKGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALGGYCDTII
VTIHEDESVSISDNGRGIPVDMHAGEGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHGVGV
SVVNALSETLQLRIFRDGYVWTQEYHDGEPQAPIARGDASRKHGSTIRFKPSPQVFADTH
FHFEIIAKRLRELAFLNSGVHITLLDERASREETFHYEGGIRAFVEHLNRSKTAIHPSVI
TLTGERDGIVVEAALQWNEGYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYMEREG
IIAKAKVAVSGEDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTMFL
DEHPKEAQAIAAKIVEAARAREAARRARELTRRKGALDIANLPGKLADCQEKDPAQCEIY
LVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDRMLSSDEIGTLITALGTGIGAG
DFDVAKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPDLVARGHIYIAQPPLYKVKKGK
EERYLKDDGELAAYLREIAMQGAQFRPAADAEPVTDEQLGGMMRQYQNIEALVQRLERRY
PSTLLWALATLPPIVAESADSATWDDFARQLRAALEVNALPAEHYTVERVGEAEALRLVV
RREHHGSVELRFFDQDFFAGGEYRHLADYARQIEGKIGVGARMERGERGLAVSRFRTAMD
WLLADARRGVEIQRYKGLGEMNPEQLWETTMNAANRRLVRVDVEDAIAADEVFSMLMGDA
VEPRRRFIEENARFVSRLDI
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaacatacgattcttccagtatccaggtgttgaaaggtctggaagcggtacgc
aaacgccccggcatgtatatcggcgataccgatgacggcagcggactgcatcacatggtc
ttcgaagtagtggataacgccatcgatgaggcgctcggcgggtattgcgataccatcatc
gtgaccatccacgaggatgaatccgtcagcatcagcgacaacggtcgtggtataccggtg
gacatgcacgccggggagggccgatccgctgccgaagtcatcatgaccgtgctgcatgca
ggtggtaagttcgatgacaacgcctacaaggtttccggcggcttgcacggggttggtgtc
tcggtggtcaacgccctttcggaaactctgcaattgcgcatcttccgtgacggttatgtc
tggacccaggagtatcacgatggcgaaccccaggcacccatcgcccgcggcgatgcatca
cgcaaacatggcagtaccatccgcttcaaaccctcgccccaggtttttgccgatacccat
tttcacttcgagatcatcgcgaagcgcttgcgcgaactggcctttctcaattccggcgtg
catatcaccctgctggatgagcgggccagccgggaggaaacctttcattatgaaggcggt
attcgcgctttcgtagagcatctcaaccgcagcaaaaccgccattcatcccagtgtgatc
actctcaccggcgagcgcgacggcattgtcgtcgaagcggccctgcagtggaacgaaggc
tataacgaggcggtgctctgcttcaccaacaatattccccaggccgatggcggcacccat
ttggcgggctttcgcggtgccctgacccgtaccttgaaccagtatatggaacgggaaggc
atcatcgccaaggccaaggttgcggtgagtggcgaggatgcacgcgaaggattgacagcg
gtgctttccgtcaaggtaccggaccccaaattttcttcgcagaccaaggaaaaactggtc
tccagcgaggtcaaaccgatagtcgagtcctccatgtccgaggcgctgaccatgtttctg
gatgagcatcccaaagaggcgcaggccatcgccgccaagatcgtcgaagcggcgcgggcg
cgggaagccgcccggcgggcacgggaactgacccgccgcaagggggcgctggacattgcc
aaccttcccggcaagctggccgactgtcaggagaaagatccggcccagtgtgaaatctat
ctggtggagggcgattccgcaggcggctctgccaaacagggccgggatcgccggcatcag
gccatccttcccctgaagggcaaaatcctcaatgtggaacgggcgcgtttcgaccggatg
ctttcgtccgacgaaattggcaccctgattaccgcgctgggtaccggtatcggtgccggg
gattttgatgtggctaagctgcgttatcaccgggtcatcatcatgacggacgcggacgtg
gacggcagccacatccgcaccctgttgctgacctttttctatcggcagatgcccgatctc
gtggcacgcggccatatttacatcgcccagccgcccctctacaaggtcaagaagggcaag
gaggaacgctacctcaaggatgacggcgaactggccgcctatctgcgtgaaattgccatg
cagggcgcgcaattccgtcccgcggcggatgccgagccggtaacggatgagcaactgggc
ggcatgatgcgtcaataccagaacatcgaggcactggtgcagcgtctggaacggcgttat
cccagtactctgctctgggccttggccaccttgccacccatcgttgcggagtcggcggat
agcgccacctgggacgattttgcgcggcagctccgcgcggcactggaagtgaatgccctg
cccgccgaacattacacggtggagcgggtgggtgaagcggaggccttgcgcctggtggtg
cgccgcgaacatcatggcagcgtggaactgcgtttcttcgatcaggatttttttgccggg
ggcgaatatcgacatctggcggattatgcgcggcagatcgagggcaaaatcggcgtggga
gcgcgtatggaaaggggcgaacgagggcttgccgtcagccgtttccgcaccgccatggac
tggcttctggcggatgcccgccgtggcgtcgagattcagcgctacaagggactcggtgaa
atgaatccggaacagctctgggaaaccaccatgaatgccgcaaaccgccgtctggtgcgg
gtggatgtggaagacgccatcgccgccgacgaggtcttttccatgctcatgggcgacgcg
gtggaaccgcgtcggcgctttatcgaggagaatgcgcgttttgtatccagactcgatatc
tga
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