Acidithiobacillus ferrooxidans ATCC 23270: AFE_0015
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Entry
AFE_0015 CDS
T00810
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
afr
Acidithiobacillus ferrooxidans ATCC 23270
Brite
KEGG Orthology (KO) [BR:
afr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afr03032
]
AFE_0015 (topA)
03400 DNA repair and recombination proteins [BR:
afr03400
]
AFE_0015 (topA)
Enzymes [BR:
afr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AFE_0015 (topA)
DNA replication proteins [BR:
afr03032
]
Prokaryotic type
DNA Topoisomerases
AFE_0015 (topA)
DNA repair and recombination proteins [BR:
afr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AFE_0015 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
ACK80607
UniProt:
B7J3B6
LinkDB
All DBs
Position
complement(15617..18172)
Genome browser
AA seq
851 aa
AA seq
DB search
MAHQLVIVESPAKAKTIQKYLGDDFQVLASYGHVRDLQPKEGAVDTEHDFAMRYTPIERN
ERHVDAIAKALRGADKLWLATDPDREGEAISWHLVELLRERQLLGDKPTQRVVFHEITKK
AVQEAIAHPREIAMDLVNAQQARRALDYLVGFNLSPLLWRKVRPGLSAGRVQSAALRLIC
ERENEIEAFVSREYWTIASRLQHAGSAFTGRLTHWQNKKLEQFDIADGDQAQAIRSGMED
DLGRQALRVREVERKSRQRQPAAPFTTSTLQQEASRKLGFNASRTMRVAQQLYEGINIGN
ETVGLISYMRTDAVNLAEEAIASIRTFIDGYYGSEFVPETPRRYKTKTKNAQEAHEAIRP
TDIARTPESLQGVLERDLWRLYDLVWKRSIACQMAPARLDLVAVDMDAGTHWTLRANGST
VTFPGFMAVYQEGKDDGDEDESNRILPPLDVGDEPLVLGIDPEQHFTEPPPRYSDATLVK
TLEAHGIGRPSTYASIIQTLQNREYVAVEQRRFHPTDLGRVVGRFLINHFERYVDYGFTA
SMEDELDAVSRGEKQWQPVLSAFWSPFRALLDEKANVSRAEATSEALEEACPQCGKPLFL
RLGRHGRFVACSGYPECNYTRPVDGPREPAEPVGRDCPDCGKPLVYKTGRYGRFISCSGY
PECKHIEPLTQPKSSGVTCPQCGEGELVEKRSRYGKVFYSCNTYPKCTYAVWGPPVARPC
PRCGWPIMIEKSGKRLGEQLACPQSECAFHFPANASDAEIAALLPGYSPPPPREKRAPPA
KKAAPARKTTAKTAKKPATEATAVAAQKTAKAKTTSAAAKKPAASKARGPSAGEGKTSPS
RKRAAKGASDS
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggcacaccagctcgttatcgtagaatcaccggcaaaagccaagaccatccagaaatat
ctgggggacgattttcaggtccttgcgtcctacggccatgtccgtgatctgcagcccaaa
gagggcgccgtggatacggagcatgatttcgccatgcgctacacccccatcgagcgcaac
gagcgccatgtggacgccatcgccaaggccctgcgcggtgccgataaactatggctcgcc
accgatccggatcgcgaaggcgaggccatctcctggcacctggtggagctcttgcgcgaa
cgccagctgctcggcgacaagccgacgcaacgcgtggtctttcatgaaatcaccaaaaaa
gccgtgcaggaggccattgcccatccccgcgaaatcgccatggatctggtcaacgcccag
caggcgcgccgcgccctcgattatctggtgggcttcaacctgtcaccgctgctctggcgc
aaggtgcgtccggggctctccgcgggacgggtacaaagtgccgccctgcgcctgatctgt
gagcgcgaaaacgaaatcgaggccttcgtcagccgcgaatactggaccatcgccagccgc
ctgcaacacgcgggcagcgcgttcaccggccgcctgacccactggcagaataaaaagctc
gaacagttcgacatcgccgacggtgaccaggcccaggccattcgtagcggcatggaagac
gacctcggtcgccaggcactgcgggtccgggaagtggagcgcaaaagccggcaacgccag
ccggccgcgcccttcaccacctccactctgcagcaggaagcgtcgcgcaagctcggcttc
aacgccagccggaccatgcgcgttgcccaacagctttatgaaggcatcaatatcggcaac
gagaccgtgggcctcatcagttatatgcgtaccgatgccgtcaatctcgccgaggaggcc
attgcctcgatccgtacttttatcgatggctactacggcagcgaatttgtccccgagacg
ccgcgccgctacaagaccaaaaccaagaacgcccaggaagcgcacgaagccatccgtcct
acggacatcgcgcgcaccccggaatccctccagggggtgctggaacgcgatctctggcgc
ctgtacgatctggtctggaagcgcagcattgcctgccagatggcgccggcccgcctcgat
ctcgtcgccgtggatatggatgccgggacacactggaccctgcgcgccaacggctccacg
gtgacctttcccggcttcatggccgtctatcaggaaggcaaggacgacggcgacgaggat
gagagcaaccgcatcctgccgcccctcgatgtcggcgatgaacctctggtgctcggcatc
gatcccgaacagcactttaccgagccccctcctcgttacagcgacgccaccctggtcaaa
accctggaagcccacggtatcggccgaccatccacctacgccagcatcattcagactctg
cagaaccgcgaatacgtcgccgtcgagcagcgccgattccatcctaccgacctcggccgg
gtagtcggccggttcctgatcaaccactttgaacgatatgtggactacggcttcaccgcc
agcatggaagatgaactggacgccgtctcccgcggcgaaaagcaatggcaacccgtcctc
agtgcgttctggagccccttccgcgcgctgctcgacgaaaaagccaacgtcagccgcgcc
gaagcgaccagtgaggcgctggaggaagcctgcccccaatgtggcaagcccttattcctg
cgcctcgggcgccatgggcgtttcgtggcctgttccggttatcccgaatgcaactatacc
cgtccggtagacgggccgcgcgaacccgccgaacccgtaggccgcgattgtcccgattgt
ggcaagccgttggtgtacaaaaccgggcgttatgggcgtttcatctcctgcagcggctat
ccggaatgtaaacatatcgaaccactgacccagcccaagtcatcgggcgtcacctgtccc
cagtgcggtgagggcgaactggtcgaaaaacgcagccgctacggcaaggttttttattcc
tgcaatacctaccccaaatgcacttacgccgtctggggaccaccggtggcacggccctgt
ccgcgttgcggctggcccatcatgatcgagaaaagcggcaagcggctgggagagcagctt
gcctgcccgcagagcgaatgtgctttccacttcccggcaaacgccagcgacgcggaaatc
gccgccctgctgcccggatacagcccgccgccgccccgcgaaaagcgcgcgcccccggcc
aagaaggctgctcccgcccgcaaaaccacagcgaaaacggccaaaaaaccggccacggaa
gccacggcggttgccgcccaaaaaaccgcgaaagccaaaacgacgagcgccgcggcaaaa
aaacccgccgcttccaaagccaggggcccgtcagccggcgaaggcaagacctccccatcc
cgtaaacgcgccgcgaaaggtgccagcgattcatga
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