Acidithiobacillus ferrooxidans ATCC 23270: AFE_0463
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Entry
AFE_0463 CDS
T00810
Name
(GenBank) formamidopyrimidine-DNA glycosylase, putative
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
afr
Acidithiobacillus ferrooxidans ATCC 23270
Pathway
afr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
afr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AFE_0463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afr03400
]
AFE_0463
Enzymes [BR:
afr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AFE_0463
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AFE_0463
DNA repair and recombination proteins [BR:
afr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AFE_0463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Zn_ribbon_6
DUF7129
Auto_anti-p27
Zn_ribbon_8
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
ACK80681
UniProt:
B7J4K6
LinkDB
All DBs
Position
403957..404760
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AA seq
267 aa
AA seq
DB search
MAELPEIELLRQKLRRNILHKRVGVMQMQNAKGEALPDGAGIKDAALKGRAITDLHRYGQ
YLFLELDRKDILALQLGGELSGELERGPVHGEGGEEPRAALEIQINGQQRLRFQGTQLGN
RLRMLDENSDVDFLTKLGPDPLMVHGEGLGILREALSRRRSALRNILLDDTFAPGIGGIW
ADEILFQARLRPDRTATSLSEEERERFLEQIPKVLDRAVRCQAKTNLLPKTFLTRHREDG
HCPSCGGALETLSVGGKNAMLCPACQS
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atggccgagttgccagaaatagaactgctcagacaaaagctgcggcgcaatatcctgcac
aagcgggtcggcgtcatgcagatgcagaatgccaagggcgaggcacttccggatggtgcc
ggcatcaaagatgccgcactcaaaggcagggccatcaccgacctgcatcgctacggtcaa
taccttttcctggaactggatcgcaaggacatcctcgccctgcagttgggtggtgagctg
agcggcgaactcgaacgcggccctgttcatggggaaggcggggaagagccgcgagcggca
ttggagatacagatcaacggccagcagcgcctgcgttttcaggggacccagttgggtaac
cgcctgcgcatgctggacgaaaacagcgatgtggacttcctcaccaagctcggccctgat
ccactgatggtgcatggggaagggcttggtatattgcgcgaggccctgagccgtcgccgc
agcgccctgcgcaacatcctgctggatgataccttcgcgccgggcatcggcggtatctgg
gcggatgaaatcctttttcaggcccgcctgcgaccggatcgcaccgcgaccagtctcagc
gaagaagagcgcgagcgtttcctggagcagatccccaaggtgctggatcgcgccgtgcgc
tgtcaggcgaagaccaacctgctgcccaagaccttcctcacccgccatcgggaagacggg
cactgcccgagttgcggcggcgcgctggagaccctttcggtggggggtaaaaacgcgatg
ctctgcccagcctgccagtcttga
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