Acidithiobacillus ferrooxidans ATCC 23270: AFE_0589
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Entry
AFE_0589 CDS
T00810
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afr
Acidithiobacillus ferrooxidans ATCC 23270
Pathway
afr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFE_0589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afr03019
]
AFE_0589
03009 Ribosome biogenesis [BR:
afr03009
]
AFE_0589
Enzymes [BR:
afr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFE_0589
Messenger RNA biogenesis [BR:
afr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFE_0589
Ribosome biogenesis [BR:
afr03009
]
Prokaryotic type
rRNA helicases
AFE_0589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACK79554
UniProt:
B7J5A5
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All DBs
Position
521368..523221
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AA seq
617 aa
AA seq
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MSQETDLRFIDFALAEPIQKAVTEIGYEQPSPIQAQSIPPLLEGRDVIGLAQTGTGKTAA
FALPLLSRVDLGLRAPQLLVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQAMTLQL
KQLQRGVQVVVGTPGRIQDHLRRKTLRLDHLQAVVLDEADEMLRMGFIDAVEDILKHTPE
GRQVALFSATMPDAIRRIAKTYLRNPLEIRIKSATTTVAAIRQRYWQVSGTHKLDALTRI
LEVEESNAWLVFVRTKTATVELAERLEARGYACGALNGDLSQAMREQTIERLKAGTLDIV
VATDVAARGLDVDRISHVINYDIPNDTEAYVHRIGRTGRAGRTGDAILFVAPRERHLLHA
IERATGQTITAMHLPSIEDVADRRMSQFKDQLTEVLNSQDLAVFETLIADYQRESDVGLG
EIAAALAYMVQKERPLIPVEAEVSRPMRSDSAGSGAGRPPSSRRRADDERGARPPRAAAA
SGGGDDVPMRRFRLDVGESHGAQVKNIVGAIANEAGIPSRNIRKVQINAEHTTVELPADI
QPSVLQHLQKVWVAGRPLQIAPTDAGASAGRASARPRPAIHEGSRVPRKILSARTEKGEY
KTKERGAGATKRKKPAR
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagaaaccgatctccgctttattgattttgccctcgctgaaccgatccaaaaa
gcagttacggagatcggctatgaacagccatcccccattcaggcgcagagcattccgcct
ctgctcgaggggcgggacgttatcggtctggcacagaccggcacgggaaagactgccgcc
tttgcgctgccgttgctgagtcgtgtcgacctcggcttgcgcgcgccgcagttgctggta
ctcgcgccgactcgtgaactcgccattcaggtagcggaggccatgcaaagttatgccaag
ttcctccccggatttcatgtgctgcccatctatggcgggcaggccatgaccttgcagctc
aagcagttgcagcggggtgtgcaggtcgtggtgggtacgcccggacgcattcaggatcac
ctgcgccgcaaaaccttgcgtctggatcatttgcaggccgtggtgctggatgaagccgac
gagatgctgcgcatgggctttatcgacgcagtggaggatatcctcaaacacacgcccgaa
ggccgacaggtggcgctgttttccgcgaccatgccggacgccatccgccgcatcgccaag
acctatttacgcaatcccttggaaatccggattaaatcggcgacgactacggtggctgcc
attcgtcagcgctactggcaggtcagcggtacccacaagctggatgcccttacccgtatt
ttggaagtagaggagagtaacgcctggctggtttttgtgcgtaccaaaacggcgacagtg
gagctggcggagcgcctggaagcgcgcggctatgcctgtggcgcgctgaacggcgatctc
agtcaggccatgcgcgagcagaccattgagcgattgaaagccgggacactggatattgtc
gttgcgaccgatgtggcggcccgcggtttggatgtcgaccggatcagccatgtgatcaac
tatgatattcctaatgatacggaagcctatgtccaccgtatcgggcgcacgggacgtgcc
ggacgtaccggagatgcgattctttttgtcgcaccacgcgaacgtcacctgctgcacgcc
atcgagcgcgcgacgggacagacgatcaccgcgatgcacctgcccagtatcgaagacgtc
gccgaccggcggatgagccagttcaaggatcagttgacagaggtgctgaatagccaggat
ctggcagtctttgaaacccttattgcggattatcagcgggaaagcgatgtgggtttggga
gaaatcgctgcagcgctggcatacatggtgcagaaggaacggcccctgattcccgttgaa
gcggaggtgtccaggccgatgcgtagcgattccgccggttcgggcgctggtcgcccgcct
tcctcccgtcgccgcgctgacgacgagcggggcgcacggccaccgcgggctgctgctgca
tcggggggaggcgatgatgtgcccatgcgtcgtttccggctggatgtgggcgaaagccac
ggtgcgcaggtcaagaatattgttggtgcgatcgccaatgaggccgggatacccagccgc
aatattcgcaaggtacagattaatgcagagcacactacggtcgaacttcctgcggatata
cagccatcagtgctgcagcatctgcaaaaggtgtgggtagccggacggccgttgcagatc
gccccgacggatgccggtgcgtctgcagggcgggcgtcagcccggccacgcccggctatc
catgaagggtcgcgggtaccgcgcaagatactttccgccaggacggaaaaaggtgagtat
aaaaccaaggagcgtggcgctggggccacgaagcggaagaaacccgcgcgatag
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