Acidithiobacillus ferrooxidans ATCC 23270: AFE_0658
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Entry
AFE_0658 CDS
T00810
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
afr
Acidithiobacillus ferrooxidans ATCC 23270
Pathway
afr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFE_0658 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afr03021
]
AFE_0658 (rho)
03019 Messenger RNA biogenesis [BR:
afr03019
]
AFE_0658 (rho)
Transcription machinery [BR:
afr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AFE_0658 (rho)
Messenger RNA biogenesis [BR:
afr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AFE_0658 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
S1CSD-TOTE-2
AAA_22
OB_RNB
ATPase_2
AAA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACK78760
UniProt:
B7J5V4
LinkDB
All DBs
Position
588567..589823
Genome browser
AA seq
418 aa
AA seq
DB search
MNLTDLKRKTAADLAVICQDMGLEGTARQKKQEIIFNILKAHARNGDAIYGEGVLEILQD
GFGFLRAASGSYMAGPDDIYVSPSQVRRFHLQTGDTVSGQIRPPKEGERYFALLKVESIN
FEAPEATRNKVNFDDLTPLFPDERLRLEYDAVPYGEMAPRIIDLVSPIGKGQRGLIVAPP
KTGKTVLLQQIAHAITANHPECYLIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPATRHT
QVAEIVLEKAKRLVEHKHDVVILLDSITRLARAFNTVVPSSGKVLTGGVDANALQKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMEVHLDRRLAEKRTYPAINL
NKSGTRREELLVPAEMLSKMWVLRKLLAPMDPVESMEFLLDKVRSTKNNAEFFDSMNR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgacctcaaacgcaaaacggccgctgatctggcggtgatctgccaggac
atggggttggagggtaccgcccgtcagaagaaacaggaaatcattttcaatatcctcaag
gcgcacgcgcgcaatggcgacgccatttacggtgagggggtgctggaaattctgcaggat
ggatttggctttctgcgtgccgcttccgggtcttacatggcggggccggatgacatctat
gtctcgccctcacaggtgcggcgctttcacctgcagaccggagacacggtgtccggccag
attcgccctcccaaagaaggtgaacgctatttcgcgctgctcaaggtggagagcatcaat
ttcgaagcgccggaagcaacccgcaacaaagtcaattttgacgatttgacgcctttgttc
ccggacgagcgtttgcgcctggaatacgacgcggtaccttatggcgaaatggctccgcgg
atcatcgatctggtatcacccatcggcaagggccagcgcggtctgatcgtcgccccgccc
aaaaccggcaagacggtgttgttgcagcagattgcccacgccattaccgccaaccatccg
gaatgctatctgatcgtgctgctgatcgacgagcgtcctgaagaagtgacggagatgcag
cgctcggtgaagggcgaagtggtttcttccacctttgacgaaccggcgacgcgccacacc
caggttgcggaaatcgtcctggaaaaggccaagcgcctggtggagcacaagcacgatgtg
gtcatcctgctcgactccatcacccgcctggcgcgcgccttcaacaccgtagtgccgtct
tccggcaaggtgctgaccggcggcgtggatgccaatgcgctgcagaagcccaagcgcttc
tttggcgccgcacgcaacatcgaagagggcggcagcctcaccatcatcgccacggcgctg
gtggaaaccggttccaagatggacgaagtcatcttcgaagagttcaagggtacgggcaat
atggaagtacatctcgaccgtcgtctagccgagaaacgtacttacccggccatcaatctc
aataaatccggcacccgtcgtgaagaactgctggtcccggccgagatgctcagcaagatg
tgggtattgcgcaaattgctcgcgcccatggatccggtggaatccatggagtttctgctc
gacaaggtgcgcagcaccaaaaataacgcagagttctttgactccatgaaccgttaa
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