Acidithiobacillus ferrooxidans ATCC 23270: AFE_1461
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Entry
AFE_1461 CDS
T00810
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
afr
Acidithiobacillus ferrooxidans ATCC 23270
Pathway
afr03030
DNA replication
afr03430
Mismatch repair
afr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AFE_1461 (dnaE)
03430 Mismatch repair
AFE_1461 (dnaE)
03440 Homologous recombination
AFE_1461 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afr03032
]
AFE_1461 (dnaE)
03400 DNA repair and recombination proteins [BR:
afr03400
]
AFE_1461 (dnaE)
Enzymes [BR:
afr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AFE_1461 (dnaE)
DNA replication proteins [BR:
afr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AFE_1461 (dnaE)
DNA repair and recombination proteins [BR:
afr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AFE_1461 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ACK78726
UniProt:
B7JA38
LinkDB
All DBs
Position
1262301..1265801
Genome browser
AA seq
1166 aa
AA seq
DB search
MRTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQ
GVKPLIGSEVWVHDVAEPERPVSLVLLCMDKTGYRNLSRLLSRAYLEGSRHGRPQIDVAW
LEGSSDGLIALSAAGQGEIGRALQRHPQQAESRARYYARLFPERFYLEVQRNGEAEQEAL
VQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRRPRRFTPEHRLP
DPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIPANQSVDEYLHDAAQKGL
QERLQELRITGDATLPYHERLLREVGVIQQMGFPGYFLIVADFIQWAKNNGVPVGPGRGS
GAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCMDQRDRVIQYVADKYGR
DRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLGMTLAKALEESEELRRR
QAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLPLFNDGSEGGGNVTQLDK
DDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPVDIQQLPLDDAATFALLKST
ETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSGMVDDFIARKHGKAQVTY
LHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLRRAMGKKKPEEMAKQRSIFL
EGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHYPQFFMSAVLT
ADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDDHIRFGLGAIKGLGRAAIQA
ILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWGVSRASLIASVDGCMEAA
AQFQSSQASLQESLFSGQEALRVAPPLVSAEAWSLTETLRQERETLGFYLSGHPMDSLRD
DLTALGTIPLGDVAVGSTVLVAGLVVARRSTRTKRGDRIYFLTLDDGQGRLEVVVFGEVW
ARAGKIREGEEPVLVLGEVGEDSYSGGLRLSALRLLDTAQAREELAAQLTLDLGLAEDMA
PRDLLAVLRKYPGQTALRLRLRVADDVVAQLRVTENLSFAASPAAIAALTALAPAAHWHW
SYRPVTLLVNNVVPLERARHATRRPA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacgccgcagttcgtccatctgcacgtacactccgaatactccctggaagacgga
atcattccggtcaaggcgctggccagacgctgcgcggagcgaggcatgccggccgtggcg
atcactgatcacggcaacctttttgccctggtgaaattttataatgctgcccgggggcag
ggcgtcaagccattgattggcagtgaagtctgggtgcatgatgtggcagaaccggaacga
ccggtcagccttgtcctgctgtgcatggacaaaaccggttaccgtaacctcagccgcctg
ctcagccgggcttacctggagggcagtcgccacggtcgtccgcagatcgacgtggcatgg
ctggaagggtcgagcgacggtctcattgccctgtctgcggcagggcagggggagatcggg
cgtgccctgcagcgccatccgcaacaggcggaaagccgggcgcgatactacgcaaggctt
ttcccggagcgtttttatctggaggtgcagcgcaacggtgaggcggaacaggaggccctg
gtccaggccacggtggcgctggcggaaaaactggatttaccgctggtggccaccaataac
gcccactttctcgatgcggcggactttgcggctttcgacgcgcgacagtgtatttctgcg
ggctttaccctggacgacccgcgccgtccacggcgttttacgccggagcaccgcctgccg
gaccccgaagaaatgcgagagcgttttgcggacctgccggaagcttgcgacaataccgtc
gaaattgcgcgacgctgtaatatggagctggtgcttgggcattatgcgctaccggactac
cccattcccgccaaccagtccgtggatgaatatttgcacgacgcggcgcaaaaaggtctg
caggaacgcttgcaggagctgcgtatcaccggcgacgccacgctgccttatcacgagcgc
ctgttgcgtgaggtcggcgtcattcagcagatgggcttccccggttattttctcatcgtc
gcggatttcatccagtgggcaaaaaataatggcgtgccggtaggacctggtcgtggttcc
ggcgccggatcgctggtggcctacgcactacggatcaccgatctcgatcccatcggcaat
ggcctgttgttcgagcgctttctcaatcccgaacgcgtttccatgcctgacttcgacgtg
gatttctgcatggatcagcgtgaccgcgtcattcagtatgtggccgacaaatacggtcgt
gaccgggtcggccagatcatcacctttgggacgatgaaggcgcgggcggtggtgcgtgat
gtcggccgggtgctgggtctaccgtatggctttgtcgaccagttggccaagctggtgccg
ggtgatctgggaatgaccctggcgaaggccctggaggaatcggaggaactgcggcgacgc
caggctgaggaagacgacgtccgcgacctgctggacatcgccttgcgcctggagggtttg
ccccgtcacgcctcgacccatgcgggtggcgtggtgatctccccggagccactggccgac
cgcctgccgctctttaacgacggctctgaaggggggggtaacgtcacccagctcgataag
gacgatgtagaaaagatggggttggtgaagttcgactttctcggcctgcgtaccctgacc
atcatcgatatggcggtcaagctcatcaatgccgatgcggcagcggcgggtcgtgcgccc
gtggatattcagcaattgcctttggacgatgcggcgactttcgccctgctcaagtccacc
gagacggcggcggtcttccaactggaatcatcgggtatgcgcgatctggtgcggcgcctg
cagccggatacttttgaagatatcgtcgccctcgtcgccctgtttcggccggggccgcta
cagtcgggtatggtggatgatttcatcgcccgcaaacacggcaaggcgcaggtaacctat
ctgcatccggatctggcaccgattctccgggaaacctatggggtgattgtctatcaggaa
caggtcatgcagtccgcccaggcgctggcgggttattccctcggcggtgccgatttactg
cggcgcgccatgggcaagaaaaagccggaggaaatggccaagcaacgcagcattttcctg
gagggagcccacaagaacggtttggccgcggaccaggccggggccatcttcgacctcatg
gaaaagtttgcggaatatggctttaacaaatcccactcggcagcctatgccctggtgtcc
taccaaaccgcttatctgaaggcccactatccgcagttttttatgtctgccgtgctgacc
gcagatatggaccacaccgacaaagttgtggcgatgattgccgagtgcgcgcgcatgggc
ctgcgcattgctccaccgagcgttcagcacagtgtgctggagttccggccggagggggat
gatcatatccgctttggtctgggtgccatcaagggcttgggacgggcggccattcaggcg
attctcgacgcccgtagaggaggcgccttcctgaatctcttcgatctgctctgccgggtg
gatacccagaaaatcaatcgtcgtgccctggaggcattgattcgcgccggagccatggat
gactggggcgtgtcgcgggccagcctgatcgcttccgtggacggttgtatggaagcagcg
gcgcagtttcagagcagtcaggcgagcctgcaggaatcattgtttagcggacaggaagcg
ttgcgggtagcgccgccgctggtgtctgccgaggcatggagcctcaccgaaaccctgcgt
caggaacgggaaactctgggcttctatctcagtggtcaccccatggacagtctgcgggat
gatctgacggcgctgggaacgatacctcttggcgacgtcgcggtcgggtccacggtattg
gtggcggggttggtggtagcgcggcgcagcacccggaccaagcgcggtgatcgtatctat
ttcctgaccctcgacgatggtcaggggcggctggaggtcgtcgtctttggcgaagtctgg
gcgcgggccggcaagatccgagagggtgaggagccggtgctggttctgggtgaggtgggc
gaggacagctattctggcggcctgcggctcagtgccctgcgtctgctggatacggcacag
gcgcgtgaggaattggctgcccaattgaccttggatctgggtcttgccgaagatatggcg
ccgcgagatctgcttgccgtgctccgtaagtatcctggccaaacggccttgcgcctgcgt
ttgcgggtcgcagacgacgttgtcgcgcaattgcgggtgacggaaaacctgagcttcgcg
gcgagtcccgccgccattgccgccctgacggcgttggcacccgcggcgcactggcactgg
agctatcggccggtgacccttctcgtcaataatgtcgtccccctggagcgtgcacggcac
gcgacgcgacgcccggcctga
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