Acidithiobacillus ferrooxidans ATCC 23270: AFE_2220
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Entry
AFE_2220 CDS
T00810
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
afr
Acidithiobacillus ferrooxidans ATCC 23270
Pathway
afr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFE_2220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afr03019
]
AFE_2220
03009 Ribosome biogenesis [BR:
afr03009
]
AFE_2220
Enzymes [BR:
afr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AFE_2220
Messenger RNA biogenesis [BR:
afr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AFE_2220
Ribosome biogenesis [BR:
afr03009
]
Prokaryotic type
rRNA processing factors
AFE_2220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ACK78762
UniProt:
B7J5K7
LinkDB
All DBs
Position
1968461..1970809
Genome browser
AA seq
782 aa
AA seq
DB search
MKRMLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFQQQEQGRKRIQDLVREGQEIIVQVDKEERSSKGAALTTFVSL
AGRYLVLMPNNPRAGGVSRRIEGEDRTQIRQHLQLLDIPENMGVIARTAGIGQELEALQR
DLEYLKQIWQAIVDTAAPRAAPFLIYQEGNVVVRALRDHFSEDIGEVLIDEEGAYNAAVQ
FMGSMMPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVAVD
VNSGRATKGQDIAETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVENKL
KEALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEATSMHV
LRLLYEECMKTGAAEVECQVPVDVAVYLLNEKRRQILELEAKTDTRILVIPTPEMVTPHY
QIQRTRVEGGSGRTAPAPGGEGNALPARPSRPTNESAALSPLTAPPPPEVLPPLRTPPAP
SSPKAKVPAKVVPPEEGILARLVRALVSRYVPVDAATFLAETSGAEMSASTEQASEISSD
EQENSGEGRSGRRRRRGGRRARARRSTQGGENGAESSSADEEAPEGSYTTEEFQDNDLLA
GPEDDSHALEELVYPGSVPAAADWHQMLVPATTRTPAADPTFQNDPAREVESLPAEEPAS
LTVQEPVKDTTRESLRMAVRQEPTPEPVQGDLLAVETMEHGGAVSVAVPGEAEQQSFPLG
DG
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttgattaatgctacccacgcggaggagttgcgggtggctttggtagat
ggtcaaaaactcctcgatctggatattgaacgcgcgtaccgggaacagaaaaaaagcaat
atttacaagggccgcatcacccgtgtggagccgagcctcgaagccgccttcgtcgactac
ggtgccgaacggcacggttttctgcccctcaaggagatcgcccgggagtacttccagcag
caggagcagggccgcaagcgcattcaggatctggtgcgggaaggtcaggaaatcatcgtt
caggtagacaaggaagaacgctccagcaaaggcgcggcgctcaccaccttcgtcagtctg
gccggacgctatctggtgctgatgccgaacaatccgcgtgccggtggcgtctcccgacgc
atcgaaggcgaggaccgcacccagatccgccagcacctccagctcctggacatccccgaa
aacatgggcgtcatcgcccgtaccgcggggatcggccaggagctggaggccctgcagcgc
gacttggaatacctcaaacagatctggcaggccatcgtcgatacggcggcgccgcgcgcc
gcgcctttcctgatttatcaggagggtaatgtcgtggttcgcgccctgcgcgatcacttt
tccgaggatatcggcgaggtgctgatcgacgaggaaggcgcctacaatgccgcggtgcag
ttcatgggctccatgatgccgaaaatggtgcatcgcctgaaatactacgacaacgacgta
cctcttttctcccgctaccagatcgagcagcagatcgagtccgcattcagccgcgaagtg
cgcctggagtcggggggagccatcgtcatcgaccacaccgaagcgctggtggccgtcgac
gtgaattcggggcgcgccaccaagggacaggatattgcggagaccgcatttcagaccaac
ctggaagccgctgaggagatcgcccggcagattcgcctgcgtgatctgggcgggcttatc
gtggtcgatttcatcgatatggaatctcccaaacaccagcgcgaagtggagaacaaactc
aaggaggcactcaagctggatcgggcccgggtacagttggggcgcatctcccgctttggc
ctcatggaaatgtcccggcaacgtctgggtgcgagcctggaggaagcctcttccgagccc
tgcccgcgctgcaacggtaccggtcagatacggggctgcgaagccaccagcatgcacgtc
ctgcgcctgctgtatgaggagtgcatgaaaaccggtgccgccgaggtagagtgtcaggta
ccggtggatgtggccgtctatctgctcaacgaaaaacgccgccagattctggaactcgag
gccaaaaccgacacccgtattctggtcattcccacgccagagatggttacgccccattat
cagattcagcggacgcgcgtggagggcggcagcggccggacggctccggcgcctgggggt
gaaggcaacgccctgcccgcacgccccagccgcccgacgaacgaatccgcggccctgagt
ccgttgaccgcaccgccaccgcccgaggtgttgccaccactacgcacaccaccggcaccc
agcagcccgaaggcgaaagtacctgccaaggtcgttccgccggaagaaggcattctggcc
cgcctggtgcgggcgctggtatcccgttatgtgcccgttgatgccgcgactttcctggcg
gaaaccagtggtgccgagatgtcggcaagcacggagcaggccagcgagatcagcagcgat
gagcaggaaaacagcggcgaggggcgcagtggccggcgccggcgccgcggtggacgccgg
gcgcgcgcccggcgttccacccagggtggagagaatggtgccgaatcctcttcggcagat
gaggaagcccctgagggcagctatacgacagaggaatttcaggataacgatctgctggcg
ggccccgaggatgacagccatgccctggaggaactcgtctatcccggctcggtacccgcc
gctgccgactggcaccagatgctggtccccgccacgacgcggactccggccgccgatccg
acctttcaaaatgatccggcacgggaggtagaaagcctgcctgcagaggagcccgcgtcc
ttgaccgttcaagaaccggtcaaagacaccactcgggaatccttgcggatggcagtgcgg
caggagcccaccccggaacccgtgcagggtgacttactggccgtggagaccatggaacat
ggcggagcagtatctgttgccgtccccggtgaagccgagcagcagtctttcccgctgggc
gacggttga
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