Artemia franciscana: 136025005
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Entry
136025005 CDS
T10524
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
afra Artemia franciscana
Pathway
afra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136025005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afra03041
]
136025005
03009 Ribosome biogenesis [BR:
afra03009
]
136025005
Enzymes [BR:
afra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136025005
Spliceosome [BR:
afra03041
]
Complex A
U2 snRNP components
U2 related factors
136025005
Complex B
136025005
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
136025005
Ribosome biogenesis [BR:
afra03009
]
Eukaryotic type
90S particles
Helicases
136025005
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
SRP54
AAA_19
nSTAND3
AAA_22
Flavi_DEAD
Cas3-like_C_2
nSTAND_NTPase5
HTH_IclR
ABC_tran
AAA_25
AAA_7
PhoH
TsaE
Motif
Other DBs
NCBI-GeneID:
136025005
NCBI-ProteinID:
XP_065556703
LinkDB
All DBs
Position
3
Genome browser
AA seq
717 aa
AA seq
DB search
MSKRRIDVPETLVSAKKSLSDGKDSADTTAIKPGVSINPYNGQVYTPRYYGLFRKRIGLP
VWEYREKFFDLLNKYQTIVLVGETGSGKTTQIPQWCVEFAKQKGVKKGVACTQPRRVAAM
SVAQRVSEEMDVVLGQEVGYSIRFEDCSSPRTLLKYMTDGMLLREGMSDPMLENYQVVLL
DEAHERTLATDILMGVLKEILKQRTDLKLVVMSATLDAGKFQNYFDGAPLLNVPGRTHPV
EIYYTPEPERDYLEAAIRTVIQIHMCEEIAGDVLLFLTGQEEIEEACKRLKREIDNLGNE
VGDLKCIPLYSTLPPNLQQRIFEPPPPNKASGAIGRKVVVSTNIAETSLTIDGVVFVIDP
GFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKQEMQDNTY
PEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTELG
AIMAEFPLDPQLAKMLIASCEFNCSNEILSITAMLSVPQCFVRPNEAKKAADDAKMRFAH
IDGDHLTLLNVYHAFKQNMEDPQWCFENFINYRSLKSSDNVRAQLSRIMDRFGLKRSSTE
FTSRDYYINIRKALVSGFFMQVAHLERSGTYLTIKDNQVVQLHPSTCLDHKPEWVLYNEF
VLTTKNYIRTITDVKPEWLLKIATQYYDMSNFPQGEARRQLEAILAKLESKQYKEGF
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacgaatagatgtaccagaaacacttgtctctgccaaaaaatcgctttct
gatggaaaagacagtgcagatactacagccataaaacctggtgtatctatcaatccttat
aatggtcaggtttacacaccaaggtactatggactgtttagaaagcggattggtttacca
gtatgggaatatcgagaaaaattttttgacttgttgaacaaataccaaactatagttcta
gttggtgaaactggatcaggcaaaacgacacaaattccacaatggtgtgttgaatttgcc
aaacagaaaggtgtcaagaaaggtgtggcttgcactcagccaaggcgagtggctgctatg
tctgtagcgcaacgtgtgtcagaagaaatggatgtggtattaggtcaggaagttggttat
agcattcgttttgaagactgttcttcaccaagaacgcttttaaaatacatgacagacggt
atgcttttaagagaaggaatgtctgatcccatgcttgaaaactaccaggttgtcttactt
gacgaggctcacgaaaggacattagctactgatattttgatgggtgtcctgaaggagatt
ttaaagcaaagaacggatttgaagttggttgttatgtcagctacgctagatgctggcaaa
tttcaaaattatttcgatggagctcctcttctgaatgttcccggtcgaactcatcctgtg
gaaatatattacacccctgagccagaaagggattatctagaagctgctatcaggacagtt
atacagattcacatgtgtgaggaaattgcaggagatgttcttcttttcttaactggtcaa
gaggaaattgaagaagcatgtaaacggctcaaacgagaaattgacaaccttggaaatgaa
gtaggtgacctgaaatgtatccctttgtactctacactccctcccaacctgcaacagcga
atttttgagccccctccaccaaataaagccagtggtgccattggaaggaaggttgttgtg
tctactaacattgctgaaacatctttaacaatagatggtgttgttttcgtgatcgaccct
ggtttcgctaagcaaaaggtatacaaccctcgtattcgtgtggagtctttactagtgtca
ccgatcagcaaagcgtctgcccagcagagggctggtcgagccggtcgaacgcgtcctggt
aaatgtttccgattatatactgaaaaggcatacaagcaagaaatgcaggacaacacttat
cctgaaattttgcgatccaatttgggttctgtggttttgcagctgaaaaaactcggaatc
gatgatttggtacattttgattttatggacccccctgctcctgagactttaatgagagct
ttagagctgttaaattacttggctgcactagatgatgatggcaacttaacagaattggga
gctattatggctgaatttccattagatccacagttggcgaaaatgttgatagcttcatgc
gagtttaattgttcaaatgaaatcttgtcaattactgcgatgctttcagtaccacaatgt
tttgttcgaccgaatgaggcaaagaaggctgctgatgatgccaaaatgcggtttgcgcac
atagatggtgaccaccttactctactgaatgtctaccatgcttttaaacagaacatggaa
gacccccagtggtgttttgaaaacttcattaactaccgatctctgaagtcttcagacaat
gttagagcacagctgtcaaggattatggatcgttttggactcaaacggtcatccacggaa
ttcacatctagagattattacatcaatattaggaaagccttagtatcaggctttttcatg
caagtggcccaccttgaacgatctggcacttatttgacaataaaagataatcaagttgtt
caacttcatccgtcaacatgtcttgaccacaaaccagaatgggtcctctacaacgagttc
gtcttgacgactaaaaactacatcaggactatcacagacgttaaaccggaatggctcctg
aaaattgccactcaatattatgacatgtcgaatttccctcaaggcgaggccagacgtcag
cttgaagccattttagcaaaactggaaagtaaacagtacaaggaaggcttttga
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