Artemia franciscana: 136027013
Help
Entry
136027013 CDS
T10524
Name
(RefSeq) collagen alpha-1(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
afra Artemia franciscana
Pathway
afra04382
Cornified envelope formation
afra04512
ECM-receptor interaction
afra04518
Integrin signaling
afra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
136027013
04518 Integrin signaling
136027013
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
136027013
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
136027013
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afra04147
]
136027013
00536 Glycosaminoglycan binding proteins [BR:
afra00536
]
136027013
Exosome [BR:
afra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
136027013
Glycosaminoglycan binding proteins [BR:
afra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136027013
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
136027013
NCBI-ProteinID:
XP_065559986
LinkDB
All DBs
Position
5:complement(15072309..15275025)
Genome browser
AA seq
2029 aa
AA seq
DB search
MKLIFFGLFLAAWAQLLTAQRSYSRRRTRQEYEEQLLPDYSYESGFPEGNGGDYDGTDYN
VNSFPREPAPPQPPPSAGCVGSQCTASCNGSGCQIQSTCEGRNCDQIPCRGPKCLIHQVC
SGECSYNPCQGSSCQVKESSCPGKDCRIRTYCEGRDCKLKPASGQNSITHTICSGDDCIA
IPCDNCAIRTLCTSENCRCLNEFCEVRHANSQSDGCKGCTDRCAECQGIKGEAGQKGQVG
MQGSTGFPGASGPEGRQGEKGSKGDTGGAGMIGELGYRGDNGIAGLTGPPGTPGFSGLEG
PQGIPGIHGCNGTDGQLGAPGSPGAPGRRGADGPNGNPGQKGDRGDLLFSSSIKGEQGEP
GRPGGMGYPGFPGIPGIKGSKGESGRGFPGQTGDQGERGERGEPRGPGPKGTKGEPGNIG
PSGAPAQFRELPEEVATGETGSPGPYGQPGEKGVSGEDGISGSRGKIGLRGPFGEKGCKG
TPGSKGQPGNDGIPGIEGFKGDKGDFGRKGSDGNDGPKGDIGERGYQGPPGSQGAKGEPA
LILQGPKGTIGERGLYGYPGIQGPYGNEGPEGPRGSEGPFGFQGPNGLQGRPGQPGRSQK
GEFGENGQPGYFGSPGDIGSRGLRGLRGKKGCKGTRVKGPDGTPGIPGIPGRPGNSGDTG
NTGYPGQKGLAGVCYGEECVGARGPPGQKGIIGEDGQDGAYGAMGAQGPKGCMGIPGVCG
CTNLEGEKGDEGDSGTEGRKGYKGPPGSYGENGDFGLIGQQGQPGQPGGNGRPGYQGYQG
PAGVKGPPGEIIYEGAEMSGPKGIKGFVGYPGIEGNRGLYGLPGERGNPGLKGSFGRKGE
EGDTGNPGRNGFPGRPGLPGNTPNPNEAEKGSPGFPGIRGETGDYGLQGPPGDCGDIVYP
QLKPGETGDKGREGSKGVKGKPGDDGCIGKQGFRGRPGPPGSMGMPGISGLEGHQGKHGE
AGDSGHLGSQGQPGCKGEKGSKGPKGNKGLRGNPGVGIQGPLGDKGIPGKNGDRGHKGRQ
GETGNEGGLGAKGIKGISGEQGTTDGEDGFMGQHGDIGDYGMPGKQGQRGIRGILGSVGD
KGPTGEFGQRGYEGVKGEKGCRGPIGYIGEVGDPGFLGPQGKKGQSGIGGPTGRRGRKGD
IGIGMPGRPGRTGRRGRRGSKGIRGEQGFQGQSIYPGPDGFKGPGGDKGVKGYQGDQGET
ILIYGDDGDAGEMGPKGYRGIPGWDGSQGPRGEKGITVFGPKGQKGTEGEEGIRGRNGEC
CGLKGVQGERGKTGDQGYRGEIGEPGSPGYGGQNGIPGMKGEYGTPGRQGKDGKNGRNGR
IGDTGQSGRRGPIGEPGYRGQSGRNGNDGIKGKIGESPEGMAGFEGGPGEKGIAGTKGLK
GSRGNRGPKGEEARKGVKGRTGEKGFRGMEGEDGTPGQSGESGELGPRGPKGFPANRPGE
KGAIGDMGYDGVRGQCDEGPKGPPGETGSCGTPGIPGLPGPAGISPAGQKGEKGVKNYQI
GPKGPPGRQGNTGNRGDLGRKGSLGDTGPRGPQGFSGIKGEEGYSLKGYKGDKGEGGDIG
PQGRRGVSGNKGQRGLNGFVGSAGGIGLPGNKGMKGNTGSPSDNDKGIRGDEGDIGVPGP
QGSRGLNGKIGLPGERGEDGERGSHGEFGQIGEIGFKGEMGHRGRQGASGPRGAKGSKGT
LGQDGVQTHLKKLSYFITRHSQSRQIPECPIGTKKMWDGFSLSHFVGDHLSQDQDLEWYD
IGQPSSCLQVFNPMPFIFCSSRNSSETCNYASRNDYSYWLSTENGQRRSTRFTNIEGDEI
KNYVSRCSVCEATRNVITVHSQSAEVPDCPLNWMELWSGYSFLMSADGKKGAGQQLSSPG
SCLETFQHIPFIECHGRGTCNYFTSSLSFWLSSIDESHMFKKPKNETFKGEAYLRKVSRC
SVCLRIQSSIQITTSRPVATTATPTVPTLDISASGDGLTTDDEDLVTGSGDGQLTSSGDY
EDSEEETTVEIVTYDWGTDSPVVPPSRRRRHKEKVYSTWTLDDSDYLDF
NT seq
6090 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgatatttttcggactatttttagcagcctgggcccaattattgacggctcag
cgttcttatagccggcgaagaactcgtcaagaatacgaagagcaacttttgcctgattat
tcttatgaatcagggtttccagagggtaacggcggtgattacgatggaacagattataat
gttaattcatttccaagagagccagctcctcctcagccaccaccttctgcaggatgtgtt
gggagccaatgtaccgcgtcttgcaacggttctggctgccaaattcaaagcacctgtgag
ggacgtaattgcgatcaaattccatgtcgtggtccaaagtgcctaatacaccaagtttgc
agtggtgaatgtagctataatccttgccagggaagctcctgtcaagttaaagaaagttct
tgccctgggaaagactgccgaataaggacatattgtgagggaagagactgcaagttaaaa
ccagcatcaggacaaaatagtattactcataccatctgttcaggagatgattgcattgcc
attccatgtgataactgtgcgatccgtactctatgtacctccgaaaactgcagatgctta
aatgaattctgtgaagtgaggcacgcaaacagtcaatcagatggttgtaaaggatgcacg
gaccgctgtgcagagtgtcaaggaataaagggtgaggcaggtcaaaaggggcaagttgga
atgcaaggaagtactggatttcctggtgcatcgggacctgaagggaggcaaggagaaaaa
ggatctaaaggagacacaggaggtgctggaatgataggagagttgggctataggggtgac
aacggaatagctggactaacaggaccacctggaactccgggtttttctggattggaaggt
ccacaaggtatcccaggcattcatggctgtaatggaacagatggtcaattaggtgcacca
ggttcacctggtgccccaggaagaagaggagctgacggtcctaatggaaacccaggtcaa
aaaggagatagaggggaccttttgtttagttcttccatcaaaggtgaacaaggagaacca
gggagaccgggtggaatgggttatcctggatttcctggcattcctgggatcaaagggtcg
aagggcgagtctggaaggggattccctggccaaactggtgatcaaggtgaacgtggtgaa
agaggggaacctcgtggacctggtccgaaagggacaaaaggtgaaccaggaaatatagga
ccaagtggagcaccagctcagtttcgtgaacttccagaagaagtggctactggcgaaact
ggaagtcctggtccatatgggcaacctggtgagaagggggtttccggtgaagatggtatt
tctggatctaggggaaaaatcggtcttcgtgggccatttggagaaaaaggatgtaaagga
acacctgggtctaaaggtcagcctggaaacgatggaataccgggaatagaaggattcaaa
ggagataagggagactttggtaggaaaggcagcgatggaaatgatggacctaagggtgac
attggtgagcgaggttatcaaggcccgccgggtagtcaaggtgcaaaaggagaaccagct
cttattttacagggaccaaaaggaacaattggggaaagaggactgtacggataccccgga
atccaaggaccttatggaaacgaaggtccagaaggtcccagaggttctgaagggccattt
ggatttcaaggacctaatggacttcaaggacggcctggccagcctgggaggtcacagaaa
ggagaatttggtgaaaatggtcaacctggatattttggttcaccaggtgacattggatcc
agaggtctacggggtcttcgtggaaagaaaggttgtaaaggaactcgagtgaaaggtcca
gatggaactcctggaataccgggcattccaggcagacctgggaatagcggtgatacggga
aatactggttatccaggtcagaaaggacttgctggtgtgtgctacggagaagaatgtgtt
ggagctcgtggaccaccaggtcaaaagggaattattggtgaggacggccaagatggtgcg
tatggtgctatgggtgctcaaggaccgaaaggttgcatgggtatacctggagtctgtgga
tgcactaatcttgaaggtgaaaagggtgacgaaggtgattctgggactgaaggtcgaaag
ggttataaagggccaccaggcagctatggagagaatggtgattttggtctcataggccag
caaggacagcccggacaaccaggaggaaatggcagaccaggatatcaaggatatcaagga
cctgcaggagtgaaaggaccacctggtgagattatctatgaaggtgctgaaatgtccggg
ccaaaaggtataaagggttttgtggggtatccagggattgaaggaaaccgcggcttgtat
ggacttcccggtgaaagagggaatccaggcttgaaaggatcatttggacgtaagggagaa
gaaggagacaccggcaatcctggaagaaacggatttcctggacgacctggtcttcctggc
aatactccaaatcccaatgaagcagaaaaggggagccctgggtttcctggaataagaggt
gaaactggtgactacggtctacaagggcctccaggtgattgtggagacatcgtttacccc
caattaaaaccaggagaaacaggagataaaggaagggaaggtagcaagggtgtaaaaggc
aagccaggagatgacggatgtataggaaaacaaggttttagaggccgtcctggaccacct
ggctcaatgggaatgcctggaatttcaggtctagagggtcaccaaggtaaacatggtgaa
gcaggagactcaggacatcttgggtcacaaggtcaaccaggatgtaaaggcgaaaaggga
agtaagggacctaaaggaaataaagggcttcgaggcaaccccggtgttggcatacaagga
cctcttggagacaaaggaataccaggcaaaaatggggatcgcggacacaaaggacgtcaa
ggtgaaactggaaatgaaggagggctcggagcaaaagggataaagggaatttctggagag
cagggaacaacagatggagaggatggtttcatgggacaacacggagacattggtgattat
gggatgccgggaaagcaaggtcagagaggaataagaggtattctaggtagcgttggagat
aaagggccaacgggagaattcggacaaagaggttacgaaggagtaaaaggtgagaagggc
tgtagaggtccaataggttatatcggtgaagtaggggatccaggatttctgggtcctcag
ggaaagaaaggacaatctggaataggaggtccaaccggaagaagaggaaggaaaggagat
attggaataggaatgccgggtcggcctggtagaacaggcagaagaggaagaagaggaagc
aagggaatacgtggcgagcaaggttttcaaggccagagtatttatcctggacctgatggt
ttcaaaggaccaggtggcgacaaaggagtcaagggataccagggtgatcagggtgaaaca
atattaatttatggtgacgatggggatgctggagaaatgggtcctaaaggttatcgtggc
atccctggctgggatgggagtcaaggaccccgtggagaaaagggtattaccgtctttgga
cccaaaggacaaaaaggtacagaaggagaagaaggaatacgaggacgcaatggagaatgt
tgcggtttaaagggtgtgcaaggtgaacgtggaaaaacaggtgaccaaggttatcgtggt
gaaatcggtgagccaggttctcctggatatggaggtcagaacggtataccaggaatgaaa
ggtgaatacggcacaccagggcgccagggaaaggatgggaaaaatggaagaaatggaaga
ataggagacactggacagagtggtagacgtggacccatcggtgagccaggctatagaggt
cagtcaggtagaaatggaaacgatggtataaagggcaaaataggcgaatctcctgaagga
atggcagggttcgaaggcggcccaggtgagaaaggaatagcaggcacaaaaggactgaag
ggttcaaggggtaatcgtggtccaaagggagaggaagcaagaaaaggggtaaagggaaga
accggagaaaagggatttcggggaatggaaggtgaagatggtactccaggtcaaagtgga
gaatcaggagagcttgggccaaggggaccaaaagggttcccagccaatagacctggtgaa
aaaggtgccattggagatatgggttatgatggagtacgcggacaatgtgatgaaggacca
aagggtccaccgggcgaaacaggatcttgtggtactcctgggattccagggcttcctggt
cccgctgggatttcaccagctggacaaaagggagagaaaggtgttaaaaactatcagatt
gggcctaaaggtccacccggaaggcaaggtaatacaggtaaccgaggggatcttggtaga
aagggatctctgggagacactggacctagaggacctcaaggtttttcaggaataaaaggt
gaagaaggctattctttgaaaggatacaagggagataaaggtgaaggaggtgatattgga
ccccaaggtcggcgaggagtgtctggaaataagggccaaagaggtttaaacggatttgtt
ggatcagctggaggcataggtttacctggaaacaaaggtatgaaaggcaatactgggtca
cctagcgataacgacaagggcattcgaggagatgaaggagatatcggagtaccaggtccc
caaggttcaagaggcttaaatgggaaaataggtcttccgggtgaacgaggtgaagatgga
gaaagaggcagtcacggggaatttggccaaataggagaaattggattcaaaggtgaaatg
ggtcatcgaggaaggcagggtgcttccggcccaagaggtgctaaagggtcaaaggggacc
ttgggccaagacggagttcaaacacacttgaagaagctatcctactttatcactcgacat
tcacagtctcggcagattccagaatgtcctattggaaccaaaaagatgtgggatgggttc
tctctttcccattttgtaggtgatcatttatcacaggaccaagatcttgaatggtatgat
atagggcagccatctagttgtctccaagtcttcaacccgatgccatttattttctgctcc
agcagaaattcaagtgaaacctgcaattatgcttcaagaaacgattatagctattggtta
agcaccgaaaatggtcagagaaggtcaacaagattcacaaatattgaaggagacgaaata
aaaaactatgtctcaagatgttcggtgtgtgaagccactagaaatgtaataacagtccat
agtcagtcagcagaagtaccagattgcccactcaactggatggaactttggagtggttat
agtttcttaatgagtgcggacggtaagaaaggtgctggtcagcagctgtcatcccccggt
tcatgcttagagactttccaacatattccttttattgagtgtcacggaagaggaacttgt
aactatttcacttcatccctatcgttctggttaagctccattgacgaaagtcatatgttt
aaaaagcccaaaaacgagacatttaaaggagaagcttacctaaggaaagttagtcgctgt
tcagtttgtctcagaatacagtcatcaattcaaataacaacttcgagacctgtagcaact
acagcaacaccaaccgtaccgacactggacatctctgcaagtggcgatggccttaccaca
gatgacgaagatttagttacaggaagtggggatggccaattaacctcaagcggtgactac
gaagactcagaagaagaaacaacagttgaaattgtaacttatgactggggtactgactcg
cccgtcgttcctccaagtagaaggcgaagacacaaggagaaggtgtattccacttggact
ttagacgactcagattatttagacttttaa
DBGET
integrated database retrieval system
