Artemia franciscana: 136030421
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Entry
136030421 CDS
T10524
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
afra Artemia franciscana
Pathway
afra03015
mRNA surveillance pathway
afra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136030421
09123 Folding, sorting and degradation
03018 RNA degradation
136030421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afra03019
]
136030421
03041 Spliceosome [BR:
afra03041
]
136030421
Messenger RNA biogenesis [BR:
afra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
136030421
mRNA cycle factors
Stress granule specific factors
136030421
Spliceosome [BR:
afra03041
]
Complex C
Other components
Complex C specific factors
136030421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_occluded
RRM_7
RRM_5
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
136030421
NCBI-ProteinID:
XP_065565457
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All DBs
Position
8:40013193..40039168
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AA seq
648 aa
AA seq
DB search
MQQAGASYPIASLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDMLKGKPIRIMWSQRDPSVRRSGVGNIFIKNLDKTIDNKAMYDTFS
AFGNILSCKVANDEQGNSKGYGFVHFETEEAAINSITKVNGMLLNGKKVFVGRFIPRKDR
ERELGEKAKYFTNVYIKNFGDEIDDEKLKDMFEQYGKITSHKVMTNEEGKSRGFGFVCFE
DPETAEKACDDLNGKDINGKTLYVGRAQKRAERQNELRRKFEAMKMERLNRYQGVNLYVK
NLDDTIDDERLRKEFQPYGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEMNGRILV
SKPLYVALAQRKEDRKAQLASQYMQRMTGMRMQQMGQMFQPSAPGYFMPTMPQPQRFYTP
AANLAQFRGTPRWAGPPVRPAAQPGQQPAAAYAMPATYRASAGMGPRPSAGAAQVAAANQ
VRAAGVAAAAAAAAASRPITGTAPVQGAVAPRGMAAAAAGPRPSGFKYTATVRNPSAPQN
IYPGAQPQAIVPAQGAVLVGGQVPLTASMLASAPPQEQKQMLGERLYPLIQNMYPELAGK
ITGMLLEIDNSELLHMLEHHESLKAKVDEAVAVLQAHQAKQPAPVKEE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagcaggtgcatcataccctattgcttccctttatgttggagatcttcatcct
gaggtaactgaggccatgctctttgagaagttttccactgcagggcctgtactatctatt
cgagtttgccgggacatgatcacaagaaggtcacttggctatgcttatgtcaatttccag
cagcctgctgatgctgaaagagctttagacactatgaactttgatatgctcaaaggaaaa
ccaattcgaattatgtggtcccagcgcgatccatctgttcgtaggtcaggagtcggcaat
attttcatcaagaatctggataagacgattgataacaaagccatgtacgataccttctct
gcttttggcaatattctatcctgcaaggttgcaaatgacgaacaaggaaactccaaaggg
tatggtttcgttcatttcgaaacagaagaagctgctattaattccatcaccaaagtcaac
ggtatgcttctcaatggaaaaaaagttttcgtcggtcgcttcattccccgcaaagatcgc
gaaagagaacttggagaaaaagccaaatattttaccaacgtatatattaaaaatttcgga
gatgaaattgatgatgaaaaattgaaggatatgtttgagcaatacgggaagataacatct
cataaggtgatgaccaacgaagaggggaaatcccgtggttttggatttgtctgttttgaa
gatccagaaacagctgaaaaagcttgtgatgatctcaatgggaaagatataaatggcaaa
acattgtatgtggggcgcgcacaaaaacgtgccgaaagacaaaatgaactgcgtcgcaag
tttgaagctatgaaaatggaacgtctcaatagatatcaaggcgttaatctatacgttaaa
aacttggatgacacgatcgatgatgaacgtctaagaaaggaattccagccctatggtacc
atcacaagtgccaaagttatgaccgaaggagggagatcaaaaggttttggtttcgtttgt
ttttcatctccagaagaagcaaccaaagcagtcactgagatgaatggaagaattctagtt
tcaaaaccattgtatgtagctctagctcagagaaaagaagaccgcaaagcacagcttgct
tctcaatatatgcagagaatgactggtatgaggatgcaacaaatgggacaaatgttccag
cctagtgccccgggttactttatgccaactatgcctcagccacagcgattctatacccca
gctgccaaccttgctcaattccgtggcacaccaagatgggcaggacctccagtacgtcca
gctgctcagccaggtcagcagcctgccgctgcttatgccatgccagccacatatcgcgca
tcagctggaatgggacctcgtccttctgctggcgctgctcaagttgctgcagcaaaccaa
gttcgtgctgctggtgtggcagcagcagcagctgctgcagccgcttctcggcccatcact
ggaactgcaccagttcaaggagccgttgctccaagaggaatggcagccgctgcagcaggt
cctcgtccaagcggtttcaaatatactgccactgtcagaaatccatctgctcctcaaaat
atttatcccggtgctcaaccacaggcgattgtaccagcacaaggagctgtacttgtcggg
ggacaagttcctcttactgcctccatgcttgcttctgctccacctcaagaacaaaagcag
atgctgggtgagcgactctaccctcttatccagaacatgtatcctgaattggctggcaaa
atcactggcatgcttctagaaatcgacaactccgagctccttcacatgcttgaacatcac
gagtcactcaaagctaaggttgacgaagcagtagctgtgctccaagctcatcaagccaaa
caaccggctcctgtcaaagaagagtaa
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