Artemia franciscana: 136031322
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Entry
136031322 CDS
T10524
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
afra Artemia franciscana
Pathway
afra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136031322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afra03019
]
136031322
03041 Spliceosome [BR:
afra03041
]
136031322
Messenger RNA biogenesis [BR:
afra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
136031322
Spliceosome [BR:
afra03041
]
Complex B
Other components
Prp19-related factors
136031322
Complex C
136031322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_2
TPR_15
Mad3_BUB1_I
TPR_12
TPR_10
NRDE-2
PPR
ARM_TT21_C
DHR-2_Lobe_A
TPR_5
Motif
Other DBs
NCBI-GeneID:
136031322
NCBI-ProteinID:
XP_065566871
LinkDB
All DBs
Position
9:34516978..34627215
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AA seq
851 aa
AA seq
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MARYSDLADFFSEEDLPYEEEILRNPFSVKHWLRYIDHKKDAPKKIVNLLYERALKELPG
SYKLWHRYLKLRREQVKGLCIIDPEYEEVNSAFERAIVFMNKMPRIWLDYCKFMMGQQKI
TRTRHLFDRALGALPITQHNRIWPLYLEFVKSHNIPETAVRVYRRYLKFSPQDAEDYVTY
LKEAERLDEVAVRLAKLVNSDDFVSKYGKSNHQLWNELCELISQNPLRVKSLNVDAIIRS
GLRRYTDQLGQLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFSQIFDAYAQFEELS
LSKRMEELSSKQTATEEDEADLDLRMARLADLMERRPLLLNSVLLRQNPHNVAEWHKRVK
LLEGKPIEIISTYTEAVQTVDSKLAVGKLHSLWVAFAKFYEENGQIEDARIIFQKGTEVN
YTKVDDLATVWCEWSEMEIRHENYEESLKLMQKATTPPPRKVAYHDESETVQARLHKSLK
IWSLYADLEESFGTFKTCKAVYDRIVDLKIATPQIIMNFALFLEENNYFEEAFKAYEKGI
SLFKWPNVYDIWNTYLTKFLKRYEGTKLERARDLFEQCLDGCPPQFAKALYLLYAKMEEE
YGLARHAMAVYERATKAVQSDEQFEMYNIYIKKAADMYGVTKTRPIYEKAIEQLNETQSR
EMCIRFADMERKLGEIDRARAIYLHCSQICDPRITEDFWQTWKEFEIKHGNEDTMREMLR
IKRSVQAMYNTQVNMMSAQMLAQAASVSGTVSDLAPGASDGMRMLEARAAEAAALERAAV
TQAAAGAGRGGIMFVRGETAARDIEVSEAARVANPDEINIDEEISDEEEEEEKDVPIETK
EVPRAVFGNLG
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggctcgatattctgatttggcagattttttctcagaagaagatttaccatatgaagaa
gaaattctaaggaatccattttcagtaaagcattggcttcgatatatagatcataaaaaa
gatgcgccaaaaaagattgtcaacttgctttacgaaagagcactcaaagaattgcctgga
agctacaaactatggcatagatacttaaagctaagaagagagcaagtaaaaggactatgt
attattgatccagaatatgaagaggttaatagcgccttcgaaagggccatcgtgttcatg
aacaagatgcctcgtatttggcttgattattgcaagttcatgatgggtcagcagaagata
acgcggacaaggcatttattcgaccgggcacttggggctcttcccatcactcaacataat
agaatttggcctctctacttggagtttgtgaagagccacaatattcctgaaacagctgtg
cgtgtttatagaagatatttgaagttctcaccgcaagatgccgaggattatgtcacatat
ttaaaagaagcagaacgattagatgaagttgccgttcggcttgcaaaactagttaacagc
gatgacttcgtctcaaaatacgggaaatcgaaccatcagctttggaacgagctctgtgaa
cttatttcacaaaatcctctccgtgtcaaatctttgaacgttgatgccattatacgaagt
ggccttcgaagatatacagatcagcttggtcaactatggaattcgcttgcagactattac
atacgaagtggactatttgaaagggcacgagatatttatgaagaggctattcaaacggtt
actaccgtccgggatttcagtcagatatttgatgcatatgcgcagttcgaagaattaagc
cttagtaaaaggatggaagaactctcttctaagcagacggcaacagaagaagacgaggct
gatttggaccttcgaatggcgagattagctgatctcatggagagaagaccattgctgctc
aattctgtacttcttcgtcagaaccctcacaacgttgctgaatggcataaaagagtcaag
cttcttgaaggaaaacctattgaaataatcagtacgtacacagaagctgttcagactgtg
gattccaaattagctgttggcaagctacactctctttgggtggcttttgccaaattttat
gaagaaaatgggcaaattgaagatgcaagaattattttccagaaaggcaccgaagtcaat
tatacaaaagttgatgatttggcaacagtttggtgcgaatggtcagagatggagatacga
cacgagaattatgaagaatctttaaaattaatgcaaaaagcgacaactccgcctccacga
aaggtagcttaccatgatgaaagtgagacagtacaagcaagactacacaaatccctaaaa
atctggtcactttatgccgatttggaagagagttttgggacattcaaaacctgtaaagca
gtttacgataggatcgtggatttgaaaatcgcaacacctcaaatcatcatgaattttgct
ctattcttggaagaaaataattattttgaagaagcatttaaagcctacgaaaaagggatt
tctttgttcaaatggccaaatgtttatgacatttggaatacttacctgaccaagttcctc
aaaaggtatgaaggaacaaaactagagcgcgcccgagatctttttgagcaatgcctagac
ggatgtcctccacaatttgctaaagctctttatcttctctatgcaaaaatggaggaggaa
tacggattagctcgtcatgccatggctgtttatgagagagcaaccaaagctgtacaatct
gatgaacagtttgagatgtacaatatttatattaaaaaagccgctgatatgtatggtgtt
actaagacgagaccaatctatgaaaaggccattgaacaattaaatgagacacaatcaaga
gagatgtgcattcgtttcgctgacatggaaagaaagcttggagagattgaccgtgcgaga
gccatctatcttcattgtagtcaaatctgtgatcccaggataaccgaggatttttggcag
acatggaaagaatttgaaatcaaacatggaaatgaagacacaatgcgagagatgctgcgt
atcaagagatccgttcaagctatgtataacacccaggtaaatatgatgtctgctcaaatg
ttggcacaagcagcctcagtgtctggaactgtttctgatttagcaccaggtgcaagtgac
ggaatgagaatgcttgaggctcgtgctgcagaagctgctgcactggaaagagctgctgtc
acccaggctgctgctggagcaggtcgagggggaataatgttcgttcgtggcgaaacagca
gctcgagacatcgaggtatctgaagcagctcgggtagccaaccctgatgagattaatatt
gatgaagaaatctcggacgaagaagaagaagaagagaaagatgtacccatcgaaacaaag
gaagtccccagagcagtttttggaaatctcggttga
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