Artemia franciscana: 136031406
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Entry
136031406 CDS
T10524
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
afra Artemia franciscana
Pathway
afra03013
Nucleocytoplasmic transport
afra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136031406
03015 mRNA surveillance pathway
136031406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afra03019
]
136031406
Enzymes [BR:
afra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136031406
5.6.2.5 RNA 5'-3' helicase
136031406
Messenger RNA biogenesis [BR:
afra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
136031406
mRNA cycle factors
Common to processing body (P body) and stress granule
136031406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
NPHP3_N
AAA_16
ATPase
SLFN-g3_helicase
DEAD
Helicase_RecD
nSTAND3
UvrD-helicase
SRP54
DUF269
AAA_22
MltA
AAA_5
Hydin_ADK
Motif
Other DBs
NCBI-GeneID:
136031406
NCBI-ProteinID:
XP_065567026
LinkDB
All DBs
Position
1:complement(54308565..54399158)
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AA seq
1128 aa
AA seq
DB search
MSIDAYGPSSQTLTFLELEENDGLLGADTQGSAFDFTDFTIPSQSQSQHQQNDDGITKRE
LEIATGSKLVLLNRDDEELLKGVSDLQFEEDEEDGFCSKDLPEHACYYCSIHDPGTVLMC
NICKKWFCNGRGSTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYSCGLRNVFVLGFI
PAKADSVVVLLCRQPCAAQSSLKDMNWDVDQWKPLISDRSFLSWLVRIPMEAEQLRARQV
TANQIQRLEELWKENPDATFEDLEKPGVDEEAQHVLLRYEDGYQYQNIFGPLVKLEADYD
KRLKESQTQENVAVRWETGLNNRTIAYFVIVKADSDVRLMQGDELRLRYVGELHKPWSSI
GHVIKVPDNFGEEVGIELRPNSNSPMDCTWNFVVDFIWKSTSFDRMQAALRKFAVDESAV
SSYIYHRLLGHEVVDVLFRVHVPKHFSAPNLPELNSSQVYAVKQALQRPLSLIQGPPGTG
KTVTSATIVYHLAKNGNGAVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVS
FLALHNQVANLEGHTELQKLLKLRDEMGELRSDDEKRYRILKRAAERQLLEAADVVCCTC
VGAGDPRLSRLKFSSILIDESMQATEPECMVPAVLGARQLILVGDHCQLGPVVMCKPAAK
AGLSQSLFERLVVLGMRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVSSDDRQLRGLDF
PWPQPDKPMFFYVTLGQEEIAGSGTSYLNRTEAANVEKIATRFLKSGIKPEQIGVVTPYE
GQRAYLVQYLQYQGSLHSKLYQEMEIASVDAFQGREKDIIIISCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLAKQWVWNNLLHFYKELGVLVEGPLTNLKESLLQFPKAK
RPMNVNPGQHFMSTTTYDAREALVPSSMYSRANRANGHVMGPPPPYPPRQPPAHYSRVGP
PMPTHDPLGYIGPEQGTSMSVPVPIGVFLNMAHVPPRFYNQHQQALARTSIPPPTTRGGK
TTRGRSNRGGQKGQVMTQPTQSQLSQQNTQSFSQSAQAMSQGMSQGYGPLSQQQVGNEFL
SQDAYGLTGEFQSQMEGLLSQDSTYQGGRAAFMNNASQSQGAPFSQPY
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgagtattgacgcctatggaccgagctctcaaactttgacatttcttgagctggaagaa
aatgatggacttttaggtgctgatactcaaggatcagcttttgattttactgatttcact
ataccctcccagtctcaaagtcaacatcaacaaaatgatgatggaattacaaagagagaa
ttggaaattgcaactggctcgaaattggtattgctaaatcgagatgatgaagagcttctc
aaaggcgtttcagacctacaatttgaggaagatgaagaagatggattctgctcaaaggat
ttacctgagcatgcatgttactactgcagcatacacgacccaggaacagttttaatgtgc
aatatatgtaagaagtggttttgcaatggacggggctccacatctggatcacacatcatc
aaccatttggttcgagcaaaacataaggaggtaactcttcacaaagatgggccacttggc
gaaactatactggaatgttattcttgtggactgaggaatgtatttgtgcttggatttatt
ccggcaaaggctgattctgtagttgttctgctctgtcgtcagccctgtgccgctcaaagc
tcactgaaagatatgaactgggacgtggatcagtggaaaccattaatatctgatcgttcc
tttttgtcttggctcgtacgaattccaatggaagctgaacagctgagagcacgtcaagtg
acggccaatcagattcagaggctcgaagaactttggaaagagaatccagatgctacgttt
gaagatttagaaaaaccaggggttgatgaagaagcacaacatgtccttcttcggtatgaa
gatggttatcagtaccagaatatattcggtccccttgtaaaactggaagctgactacgat
aagcgacttaaagaatcacaaacgcaagaaaacgtcgccgttcgctgggaaacaggtttg
aataatagaactattgcctattttgtcattgttaaagcagattcagacgtgagactcatg
caaggtgatgaactccgtctgagatatgttggtgagcttcacaagccctggtctagcatt
ggccatgttatcaaagtcccagataactttggcgaggaagttggaatcgaattgaggccg
aacagtaattctccaatggattgtacatggaactttgtcgttgactttatctggaagtcg
acatctttcgatagaatgcaagctgcattaaggaagtttgctgttgatgaatcagcagtg
tccagttatatatatcatcgcttgcttggtcatgaagtggttgatgttttgtttagagtg
catgtgccaaagcatttttctgctccaaatcttccagaacttaatagttcacaggtatat
gctgtcaaacaggcactccagcgccctctaagtttaattcaaggaccacctggaactgga
aaaacggtcacttctgctacgattgtctaccatttggccaagaatggcaacggcgctgtg
cttgtatgtgcgccatccaacattgccgttgatcagttgactgagaagatacacaaaact
ggattgaaagtggttcgtctttgcgctaaatcaagagaagcaatcgattcgcctgtgtcc
tttttagctttacataatcaagtagcaaatttagaaggtcatactgaattacaaaagctc
ttaaaattgcgtgacgagatgggtgagctgcgaagtgacgatgaaaagcggtaccgtatc
ctaaagagagctgcagaacgtcaactattagaagccgctgatgttgtttgttgcacttgt
gtaggtgctggtgatcctcgtctgtctcgcttgaaattttcttcaattctcattgacgaa
tctatgcaagctactgaaccagaatgtatggtccccgctgtccttggggcaagacaattg
atacttgtcggtgatcattgtcagcttggcccagttgtgatgtgtaagcctgcagcgaag
gcaggactttcgcagtcgctttttgaacgattagtagttctcggaatgcgaccattccgt
ctcgaggttcaatatcgtatgcacccagagctgtcaaaattcccttctaatttcttctat
gaagggtcacttcaaaatggggtatcatctgatgacagacagctgagaggattggatttc
ccatggccgcaacctgataaaccgatgtttttctatgtaactttgggacaagaagagatt
gctgggtctgggacatcttatctcaacagaactgaagctgcgaatgtcgaaaaaattgca
actaggttcttaaaatctggtattaagcctgaacagattggtgttgttactccgtacgaa
ggccaaagggcttatttggtccaatatctgcaatatcaaggatcccttcattcgaaattg
taccaagaaatggagatagccagcgttgatgcctttcaagggagagaaaaggatattata
attatttcctgtgttcgatcgaatgagcatcaaggaattggtttccttaatgatccacgt
cgattaaacgtagccttgactcgtgccaaatatggtatcatcattgttggtaatcctaag
gtccttgcaaagcaatgggtatggaacaacttgcttcacttttacaaagagcttggtgta
ttggtcgaaggcccgctcaccaacttgaaggagtccttacttcaattcccaaaagccaaa
aggccaatgaatgtcaatccaggtcaacacttcatgtcaactacaacctatgatgctaga
gaggctttggttcctagctctatgtacagccgtgccaatagagccaatggacatgtaatg
gggccgcctccgccatacccacccaggcaacctcctgcccattacagccgtgttggtcct
cctatgccaacacatgatcccttgggctacattgggcccgaacagggcacttcgatgtct
gttcctgttccaattggcgtttttcttaatatggctcacgttccaccgaggttctacaat
caacatcagcaagcccttgcacgtacgtctattcctccaccaacaactcgtggtggaaag
actactcgtggtaggagtaaccgaggcggacagaagggtcaggtgatgacacagcccact
cagtcacaactgtcgcagcaaaatactcaatcgttcagtcagtctgcccaggccatgtct
cagggtatgtctcaaggctatggacctctatcacaacagcaagtaggaaatgaatttctt
tctcaagatgcatatggtttgactggagaatttcagtctcaaatggagggtcttttgtct
caagattctacttatcaaggtggaagagcagctttcatgaataacgcatcccaatctcaa
ggagctccattctcgcagccatattga
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