Artemia franciscana: 136032927
Help
Entry
136032927 CDS
T10524
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
afra Artemia franciscana
Pathway
afra03018
RNA degradation
Brite
Enzymes [BR:
afra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136032927
Messenger RNA biogenesis [BR:
afra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
136032927
Spliceosome [BR:
afra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
136032927
Complex C
U4/U6.U5 tri-SnRNP related factors
136032927
Ribosome biogenesis [BR:
afra03009
]
Eukaryotic type
Pre-60S particles
Helicases
136032927
Transfer RNA biogenesis [BR:
afra03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
136032927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136032927
NCBI-ProteinID:
XP_065569468
LinkDB
All DBs
Position
11:19520406..19567051
Genome browser
AA seq
1028 aa
AA seq
DB search
MADIDDLFNHFDDEGSTLNSSLPELGTNPEELCEKLKRELDEEVDTKSNLKKFKPEDGPA
KPEVDDESLLKLGPQIITHSIETAESCTHEVACNPDYPYTPLRDFTGTPAKEYPFKLDPF
QQEAIQCIQNSQSVLVSAHTSAGKTVVAEYAIAQSFKENQRVIYTTPIKALSNQKYREFS
EEFKDVGIMTGDVTINPSASCLIMTTEILRSMLYRGSEVVREVAWVVFDEIHYMRDKERG
VVWEETIILLPDNVRYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPTPLQNYVYPN
GGSGIYLVVDEKGVFREDQFSEAMSILHNVGDASAGDQRGRKGGMKGGADGASILKIVKM
IQDRGFAPVIVFSFSKKECEFYATQMAKLDFNSTEEKKLVEEVFNNAMDVLSDEDKKLPQ
IVNVLPLLKRGVGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVLFTN
CRKFDGKEQRYITSGEYIQMSGRAGRRGLDDKGIVILMLDEKINPTIGRTLIKGQADQLN
SAFHLTYSMVLNLLRVKEINPEYMLERSFFQFQQYANIPRLIQNVRTKTKEYERFVVPRE
DEISTYHQLKQQFDNLTSEHQKYITKPVYLVPFLQPGRMVYVINKNHDYGWGVVLSYRKD
QNSNGNKTDMTGAEEKDSQYIAEILLCVSKIAADKKSIANIKPPGPGEPSEMKAVPCYLH
LIQKVSSVRLYVPEDLKPLDNRQSVLKSIREVERRFSNEIPLLDSLKDMKIKEKEYADIR
KAIEAFESRLKQHPLYEDKKVEEHYKLYKEKLQIGAELKIAKEELKKAKSLLQMTELKSR
KRILRRMGYCTATDVIELKGRVACEIGSGDELLLTELLFNNVFNGLDSIQTASLLSCFVC
DEKSNQMPRLVDSLSGPLKQMQDLARRIAKISNDCKLEVQEDEYVEKFKPYLMDVVAAWC
KGAPFGDLCQMTDIYEGSIIRCMRRLEELLRQMIQAAKAIGNNDLEIKFTDSIKLIKRDI
VFAASLYL
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggcggatatagacgacctttttaatcattttgacgatgaagggagtacattaaattcc
agtttaccagaattggggactaaccctgaagaactatgtgaaaaactgaaaagagaattg
gatgaagaagttgacacaaaaagcaacttgaagaaatttaagcctgaagatggaccagct
aaaccagaagttgatgatgaaagcttattgaagcttggccctcaaatcatcactcattct
attgagactgcagagtcatgtacacacgaagtagcatgtaatccagattatccatataca
cctttgagagatttcacgggaactcctgcaaaggaatatccattcaaacttgatcctttt
cagcaagaagctatacagtgcatacaaaacagccagtctgtccttgtttctgctcatact
tcagctgggaaaacagttgttgctgaatatgctattgctcagtcgttcaaagagaatcag
cgtgttatttatacaacaccaatcaaagccttgagcaaccagaaatatagagagttcagt
gaagagtttaaagatgttggtattatgactggtgatgtaactattaacccctctgcaagc
tgtcttatcatgactacagagattctacgaagtatgttatatcgtggatccgaggtagtc
agagaggtagcctgggtagtctttgacgagattcattacatgcgagacaaagaaagagga
gtggtttgggaagaaacaattatcctgctcccagacaatgttcgatacgtttttctctcg
gcaacaataccaaatgcaagacaatttgctgaatggatttgccatttgcataagcaacca
tgtcatgtggtatacacagattataggccaacgccattacagaattatgtttatccaaat
ggagggagtggcatttatctggttgttgacgaaaagggtgttttcagggaagaccagttt
tccgaagctatgtcaattctacataacgttggtgatgcatctgctggggatcaaagaggc
agaaaaggaggaatgaaaggtggggcagatggtgcctcaattttgaagatagtaaaaatg
attcaagaccgtggctttgctcctgttattgtttttagtttttctaagaaagaatgtgaa
ttctatgctacacaaatggcaaagctagacttcaatagtacagaagaaaagaagttggtt
gaggaggtgttcaacaacgcaatggatgtcctatctgacgaagataagaaattaccacag
atcgtcaacgttcttccactcttgaagcgtggagttggtattcatcatggaggacttttg
cccattctaaaggaaacaatagaaattcttttctcagaagggttgatcaaggccctgttt
gcaacagaaacttttgctatgggactcaatatgccagccagaactgtactgtttactaat
tgcaggaaattcgatggaaaagagcaaagatatattacttcgggtgaatacattcagatg
tctggaagagctggtcgtcgtggtctggacgacaagggtatagttattctgatgcttgat
gaaaagattaaccccaccatcggtagaactctgatcaaaggtcaagctgatcaactgaat
tcagctttccatttgacatatagtatggtccttaatctgctacgtgtgaaagaaattaat
ccggagtacatgctagagcgaagtttcttccagtttcagcagtatgccaatatccctagg
ttaatacagaatgttcgtacaaaaacaaaagaatatgagcgatttgtagtgcctcgagag
gatgaaatttcaacgtatcatcagcttaagcagcaatttgacaatttaacttctgagcat
cagaaatatattacgaaaccagtttatctagtaccttttttgcaaccgggaagaatggtc
tatgtcatcaataaaaaccatgattatggatggggtgttgtattatcgtataggaaggac
cagaacagtaacggaaataaaactgacatgactggagctgaagagaaggatagtcaatac
attgctgagatcttactctgtgtttcaaaaattgccgctgataaaaagagcatagcaaat
attaagcctccaggacctggtgaaccaagcgaaatgaaagctgtaccatgttaccttcat
ttgatccagaaagtatcatctgttcgtctttacgtacccgaggacttgaagcccctcgac
aatagacaaagtgtactgaaaagtataagagaagtggaaagacggttttcaaatgaaatc
ccacttttagactcgttgaaagatatgaagatcaaggagaaggaatacgctgatattagg
aaagcaatagaagcatttgaaagcagactgaaacagcatcctttgtatgaagataaaaag
gtcgaggagcattataaactgtacaaggaaaagctccagattggagctgagcttaaaatt
gccaaagaagaattgaaaaaggctaagtcccttttgcaaatgactgaattaaaatcaagg
aaacgtatccttagacgaatgggctactgtactgctacagatgttattgagttgaagggt
cgagttgcctgtgaaattggcagtggcgatgaactattgctgacagaattgttatttaat
aacgtttttaatggcttagactcaatacagactgcatcactattaagctgttttgtttgt
gacgaaaaatccaatcaaatgccacgtctcgttgactcactctctggtcctttgaaacag
atgcaggatcttgcgcggcggatagccaaaatcagtaatgactgtaagctggaagtgcaa
gaagatgaatatgttgaaaagttcaagccttatctaatggatgttgttgctgcctggtgt
aaaggagcgccatttggagatctttgtcagatgacagatatttatgaagggagcattatc
cgttgtatgcgacgattagaagaactactgcgacagatgattcaggctgctaaagccatt
ggaaataacgatcttgaaatcaaattcactgattcgatcaaattgatcaagcgagatatt
gtgtttgctgcatctttgtatctgtaa
DBGET
integrated database retrieval system
