Artemia franciscana: 136038080
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Entry
136038080 CDS
T10524
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
afra Artemia franciscana
Pathway
afra04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
afra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136038080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
136038080
NCBI-ProteinID:
XP_065577150
LinkDB
All DBs
Position
17:26856233..26974126
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AA seq
1556 aa
AA seq
DB search
MVGRRALWCALVLGLLVTLSVAKPQDGEDYIYPDENYDGDNYDQDYGIDNEQEVPSYPAP
SYPAPAPSYPAPSYQEPSYPSPVEPDPRTREPAANIVQPDRSSLTCTFEGKTYQDGEKWN
PDSCTECTCQYGITDCRQPLHGCNRGGSGNNCEGVVCPELDCQTQEYIPLGQCCAVCADD
EVDADPAAARGVYRSEMTSIPGERGPIGEAGAIGRQGEIGSPGVPGTPGTPGMPGPPGPP
PDVGPLIAQLQQSQGGEKGPAPDSFSFLQAQVGPVGPRGSPGPPGPPGPQGFQGARGESG
DLGPVGPPGPSGARGLPGLPGKDGESGEDGQPGTIGATGPPGPRGLPGMPGLPGVKGHRG
FPGLDGTKGEPGRPGDKGLPGMPGPIGPVGPMGPAGPRGERGREGPPGPAGLRGIDGLAG
APGQPGAVGKPGPPGFPGTPGSKGDAGPTGPKGSQGLQGPRGEAGRPGVPGESGPPGPSG
KDGIPGEKGAQGEHGPAGPPGFPGARGPPGMNGSPGPSGPKGNSGETGLPGVKGDGGPKG
ENGSPGPRGLPGQQGAAGKRGKIGPRGLPGPPGPHGERGAPGGRGLPGPDGPPGPKGQTG
DRGQAGPDGQKGKQGDPGRPGPPGLQGLRGLPGRTGPVGKTGAAGERGPPGADGKAGEPG
PTGLQGLPGPMGPPGERGPTGESGRDGEPGPTGSPGPRGDPGKDGAPGSQGPPGPPGQDG
ERGAQGSPGARGFQGLPGSPGIPGNPGKDGEAGLQGPPGLPGQSGPRGERGFPGERGPVG
PPGSPGDRGPVGMMGADGPSGAPGVKGDKGHAGPIGMVGLPGSRGATGLPGEKGERGSQG
PIGPEGPPGKPGERGLQGVMGPQGPPGEPAERGDPGPPGPTGEPGASGSPGERGATGPQG
LQGFPGPIGPSGIPGSKGERGLPGSKGEQGNPGNVGQPGESGSPGLPGLVGPKGARGESG
MKGDQGLMGPPGRPGESGPAGMSGSPGPIGPAGLPGIKGQPGDTGRPGNSGPQGQPGAPG
QEGQKGEQGNEGPPGQTGPIGPVGSPGDRGLPGLPGPQGPSGLRGQRGSPGEPGPSGRPG
NEGPPGPVGLMGPPGAPGTAGEPGPEGAPGKEGPPGIQGRPGDKGPVGSSGPSGPQGPPG
LPGPPGQTGLPGPSGDRGSPGEPGPQGVEGPQGPRGKSGAPGLQGDKGEKGEYGSKGAKG
HRGLIGLQGMPGPAGPSGERGSPGMPGNAGKPGEPGPRGPPGRDGSSGPQGIQGPPGLRG
PSGEPGKQGSSGPAGPPGPPGPAGESMGFDAASLAAYLGQGQSKGPDPMSSDDPNTFLAH
KFKDLSDEERKAVVIKAFNHLKDKLEKFAKPDGSRQAPAKTCKDLAEAYPSLSSGDYWID
PNEGDTRDAINVYCDMTKRATCLRPAPVKSKTLNPLKKTGEVNWFSEMEEGFQFTYKTDS
NQLTFLHLLSTTASQQMTYHCKNSVAYSDGSGARSLRHAIKMMGWNDVEITARGKKKLKY
DVIVDDCKVKSDRWAKTVINYETDRANRLPFVDVAVNDIGDINQQFSIEIGMACFV
NT seq
4671 nt
NT seq
+upstream
nt +downstream
nt
atggtggggcgacgcgccctgtggtgtgccctggtgcttggcttgttagtgacgctatca
gtggctaagcctcaggatggcgaggattatatttaccctgatgaaaattatgatggggac
aattatgaccaggactatgggatagataacgagcaagaggtgccatcatatcctgcacca
tcatatccggcgccagcaccatcatatccagcaccatcttatcaagaaccttcctatcct
tcgccggtggagccagatccgagaacaagggaaccagcagctaatattgttcaacctgat
cgaagctcactcacttgcacgtttgaggggaaaacctatcaggatggtgaaaaatggaac
cccgatagttgcacagaatgtacctgccagtatgggattactgattgtagacagccattg
catggttgcaatagagggggttcagggaacaactgtgaaggagttgtgtgtccagaattg
gactgccaaacgcaagaatacattccattagggcagtgctgtgcagtttgtgctgatgat
gaagttgatgctgatccagcagctgctcgcggtgtgtaccgaagtgaaatgacaagtatc
cctggagaaagaggccccataggtgaagccggtgcaataggtcggcaaggtgaaataggc
agtccaggtgtcccaggtaccccaggcactcctggaatgccgggtcctccaggtcccccg
ccagacgttggacctctcattgctcagcttcaacagtctcagggaggtgaaaaaggtcca
gcgcccgattcattttcgtttcttcaagctcaagtaggtccagttggaccaagaggctcc
ccaggtcctccgggtccaccaggtccacaaggcttccaaggtgcaagaggagagtccggc
gacctaggtccagttggtccaccaggtccgtctggtgctagaggacttccaggtctacca
ggtaaagatggtgaatcaggtgaagacggtcagccaggtacaattggtgctacaggccca
ccaggtccccgtggtcttcctggtatgccaggtttgccgggtgtcaaaggccacagaggc
ttcccaggattagatggaactaaaggtgaaccaggtcgtccaggtgacaaaggattaccc
ggaatgcctggtccaattggtccagttggtcctatgggcccagcaggtccaagaggtgaa
agaggaagagagggtccaccaggtccagctggtctgagaggcattgatgggctagctgga
gctccagggcaacccggtgcagttggcaagcctggtcctccaggttttcctggtactccc
ggctccaaaggtgatgcgggtcctacaggtcctaagggaagtcaaggtcttcaaggtcca
cgtggtgaagcaggtaggcctggtgtgcctggagaatcaggtccaccaggtccttcaggc
aaggacggtataccaggagagaagggagctcagggtgagcatggcccagctggtcctcct
ggtttccctggggctaggggacctccaggaatgaatggaagcccaggtccatcaggtcca
aaaggtaactccggtgaaactggtctacccggtgtgaaaggagacggaggtcctaaaggt
gaaaatggatctcctggcccccgtggtctacccggtcaacaaggtgctgctggtaaacgt
ggtaagattggtcctcgtggcctgcctggtcctccaggtcctcacggtgaacgtggagct
cctggcggtagaggtctccctggtccagacggtcctccaggtcccaaaggacagacaggt
gacaggggtcaagcaggtcctgatggtcaaaagggtaaacaaggtgatccaggaaggcca
ggtccaccaggtctccagggtcttcgtggtttacctggcagaaccggtccagttggtaag
actggtgcagctggtgagcgtggtccacctggcgcagatggcaaggccggcgagccaggt
cccactggtcttcaaggtctcccaggtccaatgggtccaccaggtgaaagaggtccaaca
ggtgaatcaggaagagatggagagcctggtccaacgggttcccctggtccaagaggagac
ccaggaaaagatggggctccaggttctcaaggtcctccaggtccaccaggtcaagacgga
gaaagaggtgctcaaggatcgcctggtgcaagaggtttccaaggacttccaggctctcct
ggcatccctggaaaccccggcaaggacggagaagcaggattacaaggtccacctggatta
cctggacaaagtgggcctcgtggagaacggggtttcccaggtgaacgtggcccagtcggg
ccaccaggctcccctggtgacagagggccagtgggtatgatgggagctgatggtccatcg
ggagctcctggcgttaaaggtgacaaaggtcatgctggtccaatcggtatggtgggtctt
cctggatcgcgaggtgctacaggtcttccaggtgaaaagggcgaacggggctcacaaggt
ccaattggtccagagggtcccccaggtaaacctggagagagaggtcttcagggagttatg
ggtccacaaggtcctcctggtgaacctgcagaaagaggagatccgggtccaccaggtcca
actggtgagcctggagcatcaggatctcctggtgaaagaggcgcgactggcccgcaaggt
cttcaaggattcccaggtccaattggtccttctggtattcctggttctaagggagaaaga
ggattgccaggatctaagggagagcaaggtaatcctggcaacgtgggacaacctggtgaa
tcaggatcacccgggcttccaggtctagttggccccaaaggagcaagaggagaaagtggt
atgaaaggagaccaaggcttaatgggacctccaggtcgtccaggagaaagtggtccagct
ggtatgtctgggtctccaggtcctataggtccagctggtcttcctggtattaaaggacaa
cctggtgacacaggtcgacctggcaattccggaccacaaggtcaaccaggggctccgggt
caagaaggtcagaaaggagaacaaggcaatgaaggtccaccaggtcaaactggcccaatc
ggacccgttggatcaccaggtgatagaggtcttcctggtctccctggacctcaaggtcca
tcaggtcttagaggacaacgaggatctcctggtgagcctggaccatcaggtagacctggg
aatgaaggtccaccaggtccagttggtctcatggggcctcctggtgccccaggcaccgct
ggagagccaggtcccgaaggtgcacctggtaaagaaggtcctcctggcattcaaggtcgt
cctggagataaaggtcctgttggttcttctggtccatcaggtcctcaaggtccccctggt
cttcccggacctccagggcagactggtctacctggtcccagtggagaccgtggctcccct
ggtgaacctggtccacaaggtgttgaaggtccacagggtccgcgaggtaagtcaggagct
cctggtttgcaaggtgacaagggagaaaaaggtgaatatggttcaaagggtgctaaaggt
caccgtggtctcatcggtctacagggtatgccaggtccagcgggtccttctggtgaacgt
ggatcccctggtatgcctggtaatgctggtaagcctggtgaaccaggtccaagaggtcca
ccaggtcgtgacggttcttcaggtccacaaggtattcaaggtcctccaggtttacgtgga
ccttcaggtgaaccgggtaaacagggctcttctggtcctgcaggtcctcctggtcctcct
ggccctgctggggaatcaatgggatttgacgctgcatcacttgcagcatatcttggccaa
ggtcaatctaagggtccagatcctatgtcttccgacgatccaaatactttcttggctcac
aaattcaaagatctctctgacgaagaaagaaaagcagttgttatcaaggctttcaatcac
cttaaagacaagcttgaaaagtttgccaaaccagatggttcaagacaagccccagcaaaa
acttgtaaagatctcgccgaagcctacccgtcactttcttcaggtgattattggatcgat
cctaacgaaggtgacacacgcgatgctataaatgtctactgtgacatgacgaaacgtgcc
acatgtctacgacccgccccagtaaaatctaaaacattaaatccgctgaaaaagactgga
gaagtcaattggttctctgaaatggaagaaggtttccaattcacttacaaaactgatagt
aatcaactgactttccttcatttgctaagtactactgcctctcaacagatgacttaccat
tgcaagaatagtgtagcatatagtgacggaagtggagctcgaagcttaagacatgctata
aaaatgatgggttggaatgatgtagaaattacagcaagagggaaaaagaagcttaaatat
gacgttatagtagatgactgtaaggtgaaatcagacagatgggcgaagacggtcatcaac
tacgagacagacagagccaacaggctgccgtttgtagatgtcgcagtaaatgatattggg
gacattaaccagcaattttcaattgaaataggaatggcatgtttcgtttaa
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