Artemia franciscana: 136040051
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Entry
136040051 CDS
T10524
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
afra Artemia franciscana
Pathway
afra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136040051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afra03019
]
136040051
Enzymes [BR:
afra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136040051
Messenger RNA biogenesis [BR:
afra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
136040051
mRNA degradation factors
3'-5' decay
Ski complex
136040051
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4-like_stalk
DUF3516
Motif
Other DBs
NCBI-GeneID:
136040051
NCBI-ProteinID:
XP_065580189
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All DBs
Position
20:31755927..31760125
Genome browser
AA seq
848 aa
AA seq
DB search
MFPNPAFKWKFELDSFQKHAIIKLEKGESVLITAHTSAGKTVVAEYAIALSRRHMMKTFY
TSPIKALSNQKFREFRSTFEDVEIITEDVQISPKASCVIMTTEILRSMLYNGQSSVQDLE
WVIFDEIHYMNDSERGVVYEEVLILLPEQVGIIMLSATVPNTLEFVSWVGMTKKRKMYVI
STPKRPVPLENYLYTGQSRKSQEHKFLILGAEGTLLHKGYLDAIEAKKPKEKVHAQQKDT
GKGPLGGGRRYYDHRCNKKEGNQVKNVTAIATPTPKWGPQHQKQLWIRVLDHLRSEDKLP
VICFTLSRSKCDSNANLLASIDLTTAKEKDAITQFLHKCLDKLKSSDKNLPQVIQMSSLL
NRGIGVHHSGILPILKEVVEMLFQDGKVKLLFATETFAMGVNMPARSVVFDDIMKHDDKG
RRQLLPSEYIQMAGRAGRRGLDSTGTVLILCKDNVPELESLHKMMLGKSQKLESQFRVTY
SMILNLLRGKQLRVQDMMKLSFGEVHFRXKIEQLEKEMKQRENPPKLYCNTCSDIESFYE
AARKYLEKKAEVYKHVLHPQVIKALKPGRFLTVVDDEXCFKLGLLLDVNNLSKEPIFKIL
VLRGSREIKRENSMKNFNCCLCSSFYDHLNFTMQEREEYDQLAYLKSDERLGNSTEYTAK
LNVLKSFDYVNSDNIVQLKGQVACSIGKQELMLTELLFHNILTDLPEEDIAALLSCLVFN
QKTEMGPNLTPSQKETIDRIQKLARDIGETQKHFGLLEDVDDYVDQFQFGLVEVVYKWTM
GVSFREIIELTDVQDGSIVRVIQQLVETLEDLRKAAQILGNPTLESKMEAASTKIKRDIV
FQGSLYLE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgtttcccaaccctgcattcaaatggaagtttgagcttgacagctttcagaaacatgct
attattaaattggagaaaggtgaaagtgttcttatcactgcacatacatctgcaggaaaa
acagtagttgctgagtatgctattgctttatctaggaggcatatgatgaagacattttac
acttcacctatcaaagccttgtccaaccagaaatttagagagtttagaagtacttttgaa
gacgtcgagattataacagaagatgtccagatcagtccaaaggcgagttgtgttataatg
acgaccgagattttaagatccatgctgtataatgggcaaagttcagttcaagacctagaa
tgggtcatatttgatgaaattcattacatgaacgattctgaacgaggtgtcgtatacgaa
gaagtattaattcttttaccagaacaggtgggaatcatcatgttgagtgccactgttccc
aataccttggaatttgtgtcatgggttggcatgacgaagaaaagaaagatgtatgttata
agcacaccgaagaggcctgtacctttagaaaattatttatatacaggacaatctagaaaa
tcacaggagcataaatttcttattttaggagctgagggaactctactgcataaaggctat
ttagatgctatagaagcaaagaaaccaaaagagaaagtccatgctcaacaaaaagacact
ggaaaagggcctctcggaggaggtagacgatattatgatcatagatgcaataaaaaagaa
ggcaatcaggttaaaaacgtgacagctattgctacccctactccaaaatggggcccacag
caccaaaagcagctttggattcgagtacttgatcatcttcgttccgaagacaagctccct
gttatttgttttactttgtcaaggagcaaatgcgattcaaatgcaaatttattggcttct
attgacttaacaacagcaaaagaaaaagatgctattactcagttcttgcacaaatgcctg
gacaaactcaaaagctcagacaagaatcttccacaagttattcaaatgtcaagtctgtta
aaccgaggaataggtgtccatcacagtggaatattgccaattttaaaagaagttgttgaa
atgctgttccaagatgggaaggttaagctgctatttgcaactgagacttttgcaatggga
gtaaatatgcctgctcgctcagtagtttttgacgatataatgaaacacgacgacaaaggt
cgaagacaattgctgccttcggaatatatacagatggctggacgtgctggaaggcgaggt
ttagactctactggcactgttctaatattatgtaaagataatgtgccggaattggaaagc
cttcacaaaatgatgctcggaaaatctcaaaaattagaatcgcagtttcgtgtgacttat
tcgatgatattgaatttactgagaggaaaacaattaagagttcaagacatgatgaaacta
agctttggggaggttcatttccgctgaaaaatcgaacaacttgaaaaggaaatgaaacaa
agagagaaccccccaaaactttactgtaacacgtgctcagatattgaaagcttttatgag
gctgctagaaagtatctagaaaaaaaagctgaagtgtacaagcatgttttacacccccaa
gtaattaaggcattgaaacctggacgttttttaacagtcgtcgacgatgaantgtgtttt
aaacttggtctccttctagatgtcaataacctttctaaagagcccatttttaagatttta
gtccttcgtgggagcagagaaataaagagagaaaactcaatgaaaaatttcaattgttgc
ttgtgctcatctttttatgaccatttgaatttcactatgcaagagcgagaagaatacgat
cagttggcttacctcaaatcggacgagcgtcttggtaattcaacagaatatactgcaaaa
ttgaatgttttgaaatctttcgattatgttaattcagataacatagttcaactgaaggga
caggtagcgtgcagcattggaaaacaagaattaatgctgaccgagttattattccacaat
attttgacagatttaccagaagaggatattgcagcattactatcatgtttagttttcaat
caaaagactgagatggggccaaaccttactccttctcaaaaggaaactatagatcgcatt
caaaagttagcaagggacatcggtgaaactcaaaaacacttcggtttactagaagatgtt
gatgactatgttgatcagtttcaatttggcctagttgaggtggtctataaatggacgatg
ggtgtgtcatttagagaaataatagaactgactgacgtccaggatggctcgatagtaaga
gtgatacagcaacttgtagagactttagaggatcttcgtaaagccgctcaaattcttggt
aatccaacactcgaaagtaagatggaggctgcttcaacaaaaataaagcgtgatattgtt
ttccaaggcagtctatatttagagtga
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