Artemia franciscana: 136040586
Help
Entry
136040586 CDS
T10524
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
afra Artemia franciscana
Brite
KEGG Orthology (KO) [BR:
afra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afra03016
]
136040586
Enzymes [BR:
afra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
136040586
Transfer RNA biogenesis [BR:
afra03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
136040586
Prokaryotic type
tRNA splicing ligases
136040586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
136040586
NCBI-ProteinID:
XP_065580904
LinkDB
All DBs
Position
21:complement(2291134..2353647)
Genome browser
AA seq
506 aa
AA seq
DB search
MVVRDYNDEIQYLEKISPTAWRIKIGFQPNMNVEGVFYVNSHLEKLMFEELRNSCRPGMV
GGFLPGMKQIANVAALPGIVGKSIGLPDVHSGYGFAIGNMAAFDMADAKSIVSPGGVGFD
INCGVRLLRTNLTEKDVLPVKEQLAQSLFDHIPVGVGSKGIIPMTANDLEEALEMGIDWS
LREGYIWAEDKEHCEEFGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVEEIFD
AWAARKMGIDRKGQVCIMIHSGSRGFGHQVATDALVAMEKAMKRDGIETNDRQLACARIM
SQEGQDYLKAMSAAANFAWVNRSSMTFLARQAFAKQFQTTPDDLDMHVIYDVSHNIAKME
EHVVNGKLKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYILTGTEHGM
QETFGSTCHGAGRALSRAKSRRNIDYQSVLNKLQEMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHDAGISKKCVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggttcgagactataacgatgaaattcaatatttggagaaaatctcacctacagca
tggaggataaaaattggctttcagccaaacatgaacgttgaaggtgttttttatgtaaac
agtcacttggagaaattgatgtttgaagaattgagaaactcttgtcgtcctggtatggtt
ggagggtttctcccgggtatgaaacagattgccaatgttgcagcgctaccaggcattgtt
ggaaaatcgatcggtttgcctgatgttcattctggatatggttttgccattggaaatatg
gctgcttttgatatggcagatgcgaaatcaattgtttctcctggtggagttggttttgat
atcaactgtggagttcgcttgctaagaacaaacctgaccgaaaaagacgtgctccctgtc
aaagaacagcttgctcagagtcttttcgaccacattccagttggagttggatcaaaaggt
attatacctatgactgcaaacgaccttgaagaagcacttgaaatgggtattgattggtcg
ttgagagaggggtatatatgggcagaagacaaagaacattgcgaggaatttggaagaatg
ctaaatgcagacccgtcgaaagttagtctacgagctaaaaagcgaggattgccacagctg
ggaacacttggagcgggtaatcattatgctgaaattcaagttgttgaggagatttttgat
gcctgggctgcaagaaaaatgggcattgacagaaagggccaagtttgcataatgattcat
tctggcagccgaggatttggacatcaagttgccaccgatgctttagttgctatggagaag
gccatgaagcgggatggaattgaaacaaacgatcgtcaacttgcttgtgccagaatcatg
tctcaggaaggtcaggattatttgaaggccatgtcagctgctgccaatttcgcttgggtc
aatagaagctctatgacgttccttgcaagacaggcttttgccaagcagttccagacaacg
cccgatgacttggatatgcatgtcatatatgatgtatcacacaatatagctaaaatggaa
gaacatgtggttaatgggaaattgaaaacactacttgtacatcgaaagggatctactaga
gcattccctccccaccatcccttaattccagtggattatcagcttaccggtcagcctgtg
ctaattggtggcactatgggaacatgcagctatattttaactggaactgaacatggaatg
caggaaacctttggatcaacctgtcatggagctggtcgtgctttgtcccgtgcaaaatct
aggaggaatatagattaccagtctgttttgaataagctacaagaaatgggaatctctatt
cgtgttgcctcaccgaaacttgttatggaagaagcacctgaatcttataaaaacgtaact
gacgttgttaacacatgtcatgatgctggaatcagtaagaaatgtgttaaactacgccct
attgctgtgatcaaaggctaa
DBGET
integrated database retrieval system
