Artemia franciscana: 136041863
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Entry
136041863 CDS
T10524
Name
(RefSeq) collagen alpha-1(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
afra Artemia franciscana
Pathway
afra04820
Cytoskeleton in muscle cells
Brite
Glycosaminoglycan binding proteins [BR:
afra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136041863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136041863
NCBI-ProteinID:
XP_065582714
LinkDB
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Position
Unknown
AA seq
1679 aa
AA seq
DB search
MGPVRFLKNQGPTPKVLFFLWIIVGYFNGINTLYPSGTSNILEIVGISNIPLGVSNVTGF
CDQRAVAIDDGVSVYGQADLAYKVTRRAVLSTTTAQVFPNGVPEDLSIVVTLRPQQNSES
VVFSLYSETGEEQIELRIGQTLKLLYREVDDDGEVLKSGGVVDFGVKINDGKWHRLGISI
KGNSVTLIKDCEQQTTKPLYRKGGDRISSSGIILIGQQLADERYFSGDIQQLLFVDGPEA
GYEVCKQFMPDCSEPLDSILAATGGRNLFSRSFQDSDTYQSAADLVYARPVGGNEQEAEE
ETEEESDSYQPTIVNGTADINGYYGIMGPPGPKGPIGPPGPQGPIGQKGEPGREGIDGTS
GIQGPPGHVFMIPISMQGNEKGPDAQTEQFRQMLSQHMMSMQGSPGPQGLTGIAGPTGPP
GSDGQKGEQGEVGEPGPRGLRGMMGLQGREGRRGRPGRDGERGATGPPGVKGEQGPPGLP
GLPGDKGDRGDKGAVGDSGAPGHDGPQGVDGPPGLPGHPGEMGPRGFPGPRGFPGLAGPH
GIPGSEGAPGPKGNAGPPGQPGPPGQTGQQGSLGPPGPQGQLGPTGPIGPRGKPGLPGLS
GADGAPGANGLPGPHGPKGDVGYTGAQGPIGFPGVRGPKGDQGLRGATGDKGSKGEKGHD
GEKGDIGPKGERGPAGQPGVAGQEGPEGPKGFEGPRGEAGPNGPTGEKGKIGPPGFPGYP
GPPGDKGDKGTPGRPGTTGEKGDRGNTGIPGERGEQGPRGFRGSRGRSGKQGFTGPKGDT
GQPGPPGPQGERGPTGADGPRGLVGAQGPPGINGKDGIPGPPGERGPPGTPGPEGPPGAP
GVFGPPGPTGETGPVGEPGEPGMSGQPGEPGLPGEAGKEGPPGLPGPQGRQGTVGPPGLP
GFPGERGLPGLPGMPGLKGEQGPYGPMGPPGDKGQQGESGKEGPPGPEGRMGLPGGPGRS
GAKGDTGESGLPGPTGRDGLPGQRGLPGPPGPMGPPGEDGDKGEPGKPGEKGFKGVKGDG
GPPGPIGPPGVRGEPGPMGPTGEKGPPGEIGRRGIKGEDGPPGVTGPVGPPGPQGLPGPV
GQKGERGDAGQKGPVGPTGPPGEQGAPGVKGAQGIPGSPGPEGPQGLKGETGPNGVPGPP
GIDGVHGKRGSPGPKGDEGKQGTQGAPGPRGPPGPEGPKGNPGNPGFPGPNGEPGPQGGK
GEAGRDGADGKQGETGAPGEAGPPGRPGLVGSPGKPGPEGPAGPQGSTGLPGEKGDKGLA
GPLGPSGPPGEQGLPGPHGPPGLRGSPGPAGDVGPPGKPGKSGNPGIIGETGPKGEKGMR
GRRGPKGHRGELGAAGRKGDAGEKGEKGDRGIEGGLGPKGEPGPLGYPGPKGNDGPPGLP
GLEGPTGPKGSEGQTGQRGEPGPQGLPGPPGPPGELPLIPPEILFQRDGVRSKRAASERR
VPERQLDKEQLDEKLEEVYKEIFSMRGSLDRMKKPTGTKENPARSCKDLYFGHPKLPDGM
YFIDPNLGMTFDAIQVFCNMTGGGETCISPDPHVAKMPNIPWKKDGGKEDWYSNLRGGFK
ITYESATPVQLTFLRLLSSDAYQNFTYTCMNAAAWYNLRTFNYDHSIKLLGDNDQEFSNK
GVRPNVIMDGCKNRKSTSRTIFEIRTNKVAQLPIVDFYPVDYGLPHQAFGFEVGAVCFK
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgggcccggttcgcttcctaaagaaccagggacccactcctaaggtgctattctttttg
tggattattgttggatatttcaatgggataaatacactgtatcctagtggcacttccaac
atcttagaaattgtgggcatcagcaacattcccttaggtgtttcgaatgtcacaggtttt
tgtgatcaacgagcagtggccattgatgatggcgtttctgtatatgggcaggcagattta
gcctacaaggtgaccagacgtgctgtattgtctactacaacagcacaagtgtttcccaat
ggtgtaccagaagacttaagtatagtcgttacgcttcggccacaacaaaattccgagtct
gtggtcttttctctgtattcggaaacaggggaagagcaaatcgaactgcggattgggcag
actttaaagctgttatacagagaagtcgatgatgacggagaagttcttaaatctggaggt
gtagttgacttcggagtgaaaataaatgacggcaagtggcatcgtcttggtatatcaatc
aagggtaactcagtcacgttaatcaaggattgcgagcaacagacgaccaaacctttgtac
agaaaaggaggagacaggatcagcagctcaggcatcatcttaattggccagcaactagcc
gacgagagatatttttcaggagacatacagcagcttctatttgttgatggcccagaagct
ggctatgaagtatgtaagcagtttatgccagactgctcagagccattagactcgatttta
gcagccacgggaggccgaaacctcttttctagaagcttccaggattcagacacatatcag
tcagctgcagatttagtttatgccagaccagttggtggaaacgagcaagaggccgaagag
gagacagaggaggagtcagatagctatcagccaacaattgtaaatggtacggctgatata
aatggctattatgggattatgggaccaccaggcccaaaagggccaatcggtccccctggt
ccacaagggccaataggacaaaaaggagagccaggtcgagaaggcatagacggtacttct
ggtattcaaggtcctcctggccacgtttttatgatacctataagcatgcaaggcaatgaa
aaaggaccagacgctcagactgaacaattcaggcaaatgctgtcccagcatatgatgtca
atgcaaggttctccgggtcctcaaggtttaacaggcatagctggaccaacaggacctcct
ggctcggacggacaaaaaggggaacaaggagaagttggcgaaccgggcccaagaggacta
cgaggaatgatgggtctacaaggccgagaaggacgtcgtggtcgtccaggccgagacggt
gagcgtggtgcaacagggccacctggcgtgaagggtgaacagggtcctccaggtcttcca
gggctacctggtgataagggcgatagaggggacaagggagcagtgggtgattctggtgca
cctggtcatgacggacctcaaggagttgatgggcctccaggcttacctggccatccaggt
gaaatgggacctagaggatttcctggacctcgtggatttccaggcttagctgggccacat
ggcattcccggcagtgaaggagctccaggaccaaagggaaatgctggcccaccagggcag
cctggcccccctggtcaaactggtcagcaaggatcactgggaccacccggtcctcaaggt
caacttggtcccactggccctattggcccacgaggtaagccaggtctaccaggactttca
ggtgctgatggggcaccaggtgcaaacggtttaccaggaccacatggaccaaaaggcgac
gtcggttacacaggagcacagggtcctattggtttcccaggagttcgtggcccaaaaggg
gatcaaggcttaagaggtgcaacaggagacaaaggttcaaagggtgaaaagggacatgac
ggagaaaagggtgatattggacctaaaggtgaaagaggacctgcaggacagcctggtgtt
gctggtcaggaaggtccagaaggccctaaaggatttgaaggaccaagaggagaagcagga
cccaatggacccacaggagaaaagggaaaaattggccctcctggatttccaggataccct
ggcccaccaggagataaaggtgacaaaggtacccctggaaggcctggtacaactggagaa
aagggggacagaggtaatactggtatacctggcgagagaggtgaacaagggccacgggga
ttcagagggtccagaggaaggagtggaaaacaaggttttactggtccgaaaggtgacact
ggacagcctggccctcccggtccacaaggtgagcgaggtccaacaggagctgacgggccc
agaggcttggtgggagctcaaggacctcctgggatcaatggcaaggatggcattccagga
ccaccaggcgaaagaggaccaccgggaacccctggaccagaaggccctcctggtgcccct
ggtgtttttggcccgccaggtcctactggtgaaactgggcctgttggtgagccgggagaa
cctggaatgtcaggtcaaccgggtgagcctggcctaccaggtgaagctggaaaagaaggt
cctccaggtttacctggacctcaaggaaggcaaggtactgttggccctcctgggcttcct
ggttttcctggagaacgtggacttcctggactaccgggtatgcctggcctaaaaggggaa
caaggaccatacggccctatgggacctcctggtgacaaaggtcaacaaggagaatcaggc
aaagagggtccacctggacctgaaggacgaatgggtctccctggtggacctggacgctct
ggcgcaaagggtgacacaggtgagtccggacttccaggaccaacaggtcgagatggtcta
ccaggtcagagaggattacctggtccaccaggaccaatgggacctccaggtgaagacggg
gacaaaggtgaaccgggtaaacccggggaaaagggctttaagggagtcaaaggagacggt
ggtccacccgggccaattggtcctcctggtgttagaggagagccaggaccaatgggtccg
acaggagagaaaggaccacctggagagataggtcgacggggcatcaagggtgaagatggt
ccaccaggagtcaccggcccagtgggtccacctggaccccaaggtctgccaggacctgtg
ggacaaaaaggagaacgaggtgacgctggacaaaaaggtcctgttggtcctacgggtcca
cctggtgagcagggtgctcccggagtcaagggagctcaaggtattcctggttcccctgga
cctgagggtccacaaggattgaaaggtgaaactggaccaaatggagttccaggtccacct
ggaatagatggtgtccatggtaaacggggctcccctggaccaaaaggtgatgaaggaaaa
caaggcacgcaaggggcaccaggaccacgtggtccacccggcccagaaggtccaaaaggc
aatccaggtaatccggggttccctggtccaaatggtgaaccaggcccacaaggaggaaaa
ggtgaagctggaagagatggagctgatggaaagcaaggtgaaactggtgctcctggcgaa
gcagggccacctggacgacctggacttgttggctcccctggtaaaccgggtcctgaaggt
ccagcaggccctcaaggtagcactggacttcctggggagaaaggtgacaaaggattggct
gggccgcttggtccttccggaccgcctggtgagcaaggacttccaggaccacacggtcct
ccaggtcttagaggatctcctggccctgctggtgatgtagggccaccaggaaaacccggg
aaatctggaaaccctggtattatcggtgaaactggtccgaaaggtgagaaaggtatgcgc
ggtcgaagaggtccaaaaggtcacagaggtgaacttggcgctgcaggaaggaaaggtgac
gctggtgaaaagggagaaaaaggagacaggggtatcgaaggaggactagggccaaaaggc
gaaccgggaccactaggatacccaggacctaaaggaaatgacggtcctcctggattgcca
ggtctagaaggacctactggtccaaagggctcagagggtcaaacaggacaacgtggtgaa
cctggccctcaaggtctcccgggtcctccaggaccacctggagagctcccattaatacct
cctgaaattctgtttcaaagagatggcgtaagatcaaagagagctgcttctgagcgtagg
gtaccagaaagacaacttgataaagaacaacttgatgaaaaattggaagaagtttataaa
gagatattttcaatgaggggaagtcttgacagaatgaagaagccaactggaacaaaagaa
aatccagcaaggtcttgtaaggatctctattttgggcatccgaagctgccagatggcatg
tatttcattgaccctaatcttggaatgacgttcgatgccatccaagtcttctgtaacatg
acagggggtggagaaacatgtataagtccggatcctcatgttgctaagatgccaaatata
ccgtggaaaaaagatggtggcaaagaggattggtattcaaaccttcgtggaggctttaaa
attacatacgagtcagcaaccccggttcagctcacgttccttcgtcttctcagctctgac
gcttaccagaatttcacgtacacatgtatgaacgcagcagcttggtataaccttagaacg
tttaattacgatcattcaattaaacttcttggagataatgatcaagaatttagtaacaaa
ggagtaaggccgaatgtaattatggatggatgcaagaaccgtaaaagtacaagtaggaca
atatttgagataaggacgaacaaagttgcacagctaccgatagtggatttctatccagtg
gattacggactaccgcaccaggcttttggatttgaagttggtgcagtgtgttttaaatga
DBGET
integrated database retrieval system