Allofrancisella frigidaquae: E3E15_01535
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Entry
E3E15_01535 CDS
T06608
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
afri
Allofrancisella frigidaquae
Pathway
afri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3E15_01535 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afri03019
]
E3E15_01535 (rnr)
03016 Transfer RNA biogenesis [BR:
afri03016
]
E3E15_01535 (rnr)
Enzymes [BR:
afri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E3E15_01535 (rnr)
Messenger RNA biogenesis [BR:
afri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E3E15_01535 (rnr)
Transfer RNA biogenesis [BR:
afri03016
]
Prokaryotic type
tRNA degradation factors
E3E15_01535 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QIV94104
UniProt:
A0A6M3HS90
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All DBs
Position
333784..336063
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AA seq
759 aa
AA seq
DB search
MSKYSINNDPNRDLEAQKYENPIASRQMILCYIKDMQLPVSVENIALALEINKKSSFEGL
VNRLGAMVRDGQLVKDKSYYSLPEIKNVYVTSKVSVDRDGRLEIFSHTLNTKVSILSSQA
KMLMVGDEVTARVLGINKKGKIEAEIKSVVSRAQKTITGYYYKIFDGHFLKPINKNITSD
IVLLPPRQKIDQDSLIEAEIIVQPSINSVAVAKFKQEVEAISPVKQAMMLATKKFDLIEQ
WSKKTLEYLDTLSDDIITKERVDLRKLNFVTIDGEDAKDFDDAVFASRTKAEGWKLYVAI
ADVSSYVQKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLQPNVDRYSLVCEMNI
SSTGKLTRYKFYSAVINSKARLTYTEVAKLLDKKQNSIVENTPELVPDIFVLYDLYKVLH
TARDQRGAIDFDTIETQIILDKHNHIQSIIPRQRNDAHRLIEECMLVANVAAAKFVIKHK
KTSPFRVHSEPKEDKMDALKKHLSRHGIHLSYGKDGKVTPKALAQMLESIKSRPDYEDIQ
MMTLRSMNQAVYSIDNVGHFGLAYDEYTHFTSPIRRYPDLVVHRIIKSIINEYNHGGCDY
KSSELANICDNASFQERNADGASKQVEDWLKCYFMQDYIGHVLEAKITHINGLGLFVELK
DMFIEGLVHVSTIPGDYYIFDETKDILIGRRNHKVFKIGQKITIRVIRADLESVHIDFEL
YSPEQSAKDFDSSKKYSTKKKVKKRKPKRDKRKNKTKQS
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaagtacagtataaataatgatcctaatagggatctagaagcacaaaagtatgaa
aaccccattgcgagtcgccagatgatattgtgctatatcaaggacatgcagctgccagta
agcgtagaaaatattgctttagctttagaaattaacaaaaaatcttcatttgaagggttg
gttaatagactaggagctatggttagagacggtcaattagttaaagataaatcatattat
agccttccggaaataaaaaatgtttatgtaacttcaaaagtttcggttgatagagatggt
agattagaaatatttagccatacattaaatactaaagttagtattctttcctcccaagca
aaaatgttaatggtaggtgatgaagttacagctagggtattaggaataaataaaaaaggt
aaaattgaagcagagataaaatcagtagtttcaagagcccaaaaaaccataacaggttat
tattataaaatttttgatgggcactttctcaagccaataaataagaatataactagtgat
atagtcttattacctcctagacaaaagatcgatcaggattcactaatagaagctgaaata
atagttcaaccaagtattaatagtgttgcagttgctaagttcaagcaagaagttgaagcg
atatctccagttaaacaagctatgatgctagctactaaaaagtttgatttaatagagcaa
tggagtaaaaaaactcttgaatacttagatactctttcagatgatataataactaaagaa
agagtagatctgcgaaagcttaattttgttactattgatggcgaagatgcaaaagatttt
gatgatgccgtgtttgctagtagaactaaagctgagggttggaaattatatgttgcaata
gcagatgtttcaagttatgttcagaaagattctgctttagatttagatgctaaacgccgt
tcaacctcagtttattttcctggatatgtgatacctatgcttccagaaaaattatcaaat
ggtttatgctctttacagccaaatgttgataggtattctttagtttgtgagatgaatata
agtagcactggtaagttaactagatataagttttattcagctgttataaattctaaagca
cgtttaacttatactgaagtagcaaaactattagataagaaacaaaactctatagtagaa
aatactccagagttagtgcctgatatatttgttttatatgatttgtataaagtcttgcat
actgccagagatcaaagaggagcaatagattttgatactatagagacacaaatcatcctt
gataagcataaccatatacaatcaataataccaaggcaacgcaatgatgcgcatagacta
atagaagagtgcatgttagtagcaaacgttgcagcagctaagtttgtaataaagcataaa
aaaacttctccgtttagagtacatagcgagcctaaagaggataagatggatgctttaaaa
aaacatttatctcgtcatggtatccatctatcttatggtaaagatggtaaagtaacacca
aaagccttagcacaaatgctagaaagtattaaaagtcgtcctgattatgaagatattcaa
atgatgactttgcgtagcatgaatcaagctgtttatagtattgataatgttgggcatttt
ggtcttgcttatgatgagtatactcattttacttcacctattcgtagataccctgattta
gtagttcatagaattattaaatctattatcaatgaatataatcatggtggttgtgactat
aagtctagtgagttagctaatatttgcgacaacgcatcttttcaagaaagaaatgcagat
ggagcctccaaacaagtagaagattggttgaagtgttactttatgcaagattatataggg
catgttttagaggcaaaaatcacacatatcaatggtctaggattgtttgttgagcttaaa
gatatgttcatagaaggcttggttcatgtttcaactattcctggtgattattatattttt
gatgaaactaaagacattttgattggtagaagaaaccacaaagtttttaagataggtcaa
aaaataaccataagagtaataagggcagatttagaaagtgtccatatagattttgaatta
tattctccagagcaatcagcaaaagattttgacagctctaaaaaatatagtactaagaag
aaagttaaaaagagaaagccaaagcgtgataaaagaaaaaataaaactaaacaatcttaa
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