Allofrancisella frigidaquae: E3E15_01655
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Entry
E3E15_01655 CDS
T06608
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
afri
Allofrancisella frigidaquae
Pathway
afri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
E3E15_01655 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afri03400
]
E3E15_01655 (recD)
Enzymes [BR:
afri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
E3E15_01655 (recD)
DNA repair and recombination proteins [BR:
afri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
E3E15_01655 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
Viral_helicase1
UvrD_C_2
AAA_11
UvrD_C
RecD_N
SH3_13
Helicase_RecD
SLFN-g3_helicase
UvrD-helicase
AAA_22
nSTAND3
FtsK_SpoIIIE
DEAD
CbiA
T2SSE
AAA_28
PIF1
Motif
Other DBs
NCBI-ProteinID:
QIV94127
UniProt:
A0A6M3HSN3
LinkDB
All DBs
Position
358689..360437
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AA seq
582 aa
AA seq
DB search
MVYKTLKDCQSYLSDIQAIDYFLAKEISDFLNNDNPDIFHLLIALSESYRQGHSCLDLIE
IADQTLWSEPQQDTSKVGYKFESLAKLQQKIESLNLASKEYPIVYKFDCLYFRRLWLYEN
EIAEVVSSKLKLDLKNLDFEKAKKILKELFDKSETINYQKIAVANSLIRGFSIISGGPGT
GKTTTIMKLLIALEYINSNTKLSIQILAPTGKATNRLIESLELDQLNVNTDIEIMTVHRF
LGVRNNSSKLKYHKDNLADCDALIIDEASMLDIGLFVKILQAIKPSCKLILVGDVNQLPA
VEVGNLLVEFTKIKSIRDNLNETKKVIGQVTGYSDFELINECIIYLQKNYRSNRVISEFA
NSIINENYKNLYSESNIYGSINFHSLSKLDVVLSDFVHKYYIKLSKLKDVKKSFEILKSF
RILLANKNTQIGVDNFNKKIVKLLGKKDTDYYDGKPIMITENNYTLDVFNGDVGLVYNQE
VYFENSNTGFKKINISLLPKHEIAYAMTIHKAQGSEFDEVMLILPQKANKILSNKLVYTG
VTRAKLAVTIVSDKEIWEYAITNNPGRFSNISKLIDLNPVKK
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggtttataaaactcttaaagactgtcaaagctatttatcagacatacaggctatagat
tattttcttgcaaaagaaatttctgatttcttaaacaacgataaccctgatatttttcat
cttttaatcgctttaagcgaaagttatagacaaggtcatagctgtttagatttaattgag
atagcagatcaaactttatggtctgaacctcaacaagatacatccaaagtgggttataaa
tttgaaagcttggctaagttacagcaaaaaattgaaagcttgaaccttgctagtaaagaa
tatccaatagtttataaatttgactgcttatattttagaaggctatggttatatgaaaat
gaaattgcagaagttgtatccagtaaattaaaactagaccttaaaaatttagattttgaa
aaagctaaaaaaatattaaaagagttatttgataagtctgagactattaattaccaaaag
atagcagtagcaaatagtcttattagaggttttagtattatctctggaggccctggtaca
gggaaaactactactatcatgaagcttttaatagccctagaatatataaattcaaatact
aagttaagcattcaaatattagcccctacgggtaaagcaactaatagattaatagaatca
ttagaactagatcaacttaatgtcaatactgatatagaaattatgacagtacatcgattt
ttgggtgtgcgaaataattcttctaaacttaaataccataaagacaatctagctgattgt
gatgctttgattatagatgaagcatctatgctagatataggtttgttcgtgaaaattctt
caagcgattaaacctagttgcaaacttatattagttggagatgttaatcaactacctgca
gtagaagttggtaatttattagtggaatttactaaaataaaaagtattagagataatctt
aatgagactaagaaagttattggccaagtaactggctacagtgattttgagctgattaat
gaatgtatcatatatctacaaaaaaattaccgttcaaatagagtgatatccgaatttgct
aacagtataattaatgaaaattataaaaatttgtattccgaaagtaatatttatggttca
ataaatttccattcacttagtaaactagacgttgttttatctgattttgtccataaatat
tatattaaactttcgaaacttaaggatgttaaaaaatcttttgaaattttaaaatctttc
aggatattgttggctaataaaaatactcagataggagtagataactttaataagaagata
gtaaaacttttaggtaaaaaagatactgattattatgatggtaagccgattatgataaca
gaaaataattatactctagacgtttttaatggagatgtcggtttggtttataatcaagag
gtttattttgaaaattcaaatactggttttaaaaaaataaatatatctctgctaccaaag
catgaaatagcatatgcaatgacaatacataaagctcaaggttccgagtttgatgaagta
atgctaattttgcctcaaaaagcaaataaaattctttcaaataagctagtttatactggc
gtaactagagctaagctagctgttactatagtttcagataaagaaatatgggaatatgct
attacaaacaatccaggaaggttctccaatatctctaaactaatagatttaaatcctgtt
aaaaagtaa
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