Allofrancisella frigidaquae: E3E15_02960
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Entry
E3E15_02960 CDS
T06608
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
afri
Allofrancisella frigidaquae
Pathway
afri03030
DNA replication
afri03430
Mismatch repair
afri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E3E15_02960 (dnaE)
03430 Mismatch repair
E3E15_02960 (dnaE)
03440 Homologous recombination
E3E15_02960 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afri03032
]
E3E15_02960 (dnaE)
03400 DNA repair and recombination proteins [BR:
afri03400
]
E3E15_02960 (dnaE)
Enzymes [BR:
afri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E3E15_02960 (dnaE)
DNA replication proteins [BR:
afri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E3E15_02960 (dnaE)
DNA repair and recombination proteins [BR:
afri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E3E15_02960 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QIV94373
UniProt:
A0A6M3HT54
LinkDB
All DBs
Position
635829..639302
Genome browser
AA seq
1157 aa
AA seq
DB search
MISHLRVHTGFSVIDSTVRLNELFETAKQKDIVALALTDVCNLFAAVKFYKQALKTGIKP
IFGVELKIDTQLGICDLILLAENNQGYQNIVNLISRAYQEADRVGSIPLVPKKWFNQMDF
KNTICLSGGQNGELGKAILSKDSSKILEVISEYISIFGKDNYFIEIHKLGYENEGTYVEK
ALELAHEKGLLAVATNLTVFMNSEDYDIHEIRACINEKTTILDETRKSRFTQEQYLKSSQ
EMHETFGGLPVLLTNTLAIARRCNVTFELGKPSLPTVGIPEGLTQREYFSKICYKGLEKR
LEKILSLKSADKHEHIIKTYKERLQREIDIICDMGFPGYFLIVEDFIRWAKENDIPVGPG
RGSGAGSLVAYSLSITDIDPLSYGLLFERFLNPERVSMPDFDIDFCIQGRDRVIKYVEQR
YGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETPGTTFKKILHEGEPL
YEEMKSDEDVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISEFAPIYCEDKGGDIVTQF
DKGDVEDVGLVKFDFLGLKNLTIINNTIKSINAKKKAGEPFLNISDIPLDDKLTYKLLQA
GNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIPIFIDRKHGRKQISYL
HPLLEVVLKETYGIPVYQEQVMQMAQKLAGYTLGAADLLRRAMGKKKPEEMEQQRKIFKE
GAKKYNNIESSLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAWLKAHYPDEYMAALMS
GDMGNTDQLVKFILDCKNMGISVQAPNINTSVYACIAVSKGTILLGLGAIKGLGGEAIKS
ILTERELAGKFSSIFDLCRRVDLRKVNKKALEALCFAGAINGISKNRATAFNSIEKAIKN
AGYVNEMNAAGQDDLFGFTEQESDTDSEFEKECFAEEWSLRELLINEKKALGMYFTGHIL
DEESHWRNHVSFSDLEKIQRSNMDGNSVRIIASMITPAIRRKTKTGRILYIINIDDEFDR
VDCLVSEDIFASVKDSISVDDIVVVEGKVSRDIQRERNKLSVDKVQPISQYIDENFSKVR
LTLKGENINPTNLIKVLNNFKNNINLHNEQKSNILEIVISLDGVEANFDTLQKPFSIYEF
VNDISSLIAEGSTVSLG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgatttctcaccttagggttcatacagggttttctgttattgacagtacagttaggcta
aatgagctttttgaaacagctaaacaaaaagatatagttgctttagctttgactgatgta
tgtaatttatttgcagctgttaaattttataaacaagccttaaaaacaggcatcaaacca
atatttggtgttgagctaaaaatagatactcagttggggatatgtgatttaatattacta
gctgaaaataatcaagggtatcaaaatattgttaaccttatttcaagagcatatcaggag
gctgatagagtaggctcaattcctttagtgcctaaaaaatggtttaatcaaatggatttt
aaaaatactatttgtttaagcggcggtcaaaatggcgagttaggtaaagctatactttca
aaagattctagtaaaattttagaagttatatcagagtatattagtatctttggcaaagat
aattattttatagaaatccataaattaggttatgaaaatgaaggcacatatgttgaaaaa
gctttagaattggcccatgaaaaaggtttgcttgctgtagctactaatctaacagtattt
atgaattcagaagattatgatattcatgaaattagagcttgcattaacgagaaaacaact
atcttagatgagactagaaaatctaggtttacccaagaacaatatttaaagtcatcacaa
gaaatgcacgagacctttggtggtttaccagtattgttaaccaatactttagctatagca
aggcgttgtaatgttacatttgaacttggtaaaccatcattacctactgttggtatccca
gaaggtttaacacagagagaatatttttcaaaaatatgttataaaggactagaaaagcgt
ctagaaaaaatattatcgcttaagtctgcagataaacatgagcatataattaaaacttat
aaagaaagattacaaagagaaatcgatatcatttgtgatatgggttttccggggtatttt
cttatagttgaggatttcatacgttgggcaaaagaaaatgatattccagtaggacctgga
cgtggttcaggggctggttcattagtagcttattctttatcgattacagatattgatcct
ttatcatacggattactttttgaaaggtttttgaatcctgaaagggtatcaatgcctgat
tttgatatagatttttgtatccaaggtagagatagagtaatcaaatatgttgaacaaagg
tatggtaaggaaagcgtagcccagattattacgtatggaacaatggctgctaaaggtgtt
gtgcgcgatgtagttagagttatggggcaaagttttggttttggtgataggatagctaaa
cttattccagaaacacctggtacaacttttaaaaaaattcttcatgaaggtgagcctttg
tatgaggaaatgaaatctgacgaggatgttgcagaaatagttgaaaaagcccaaaaactt
gaaggcttaccacgtagtttaggtaaacatgcagcgggtattgttatatcaccaacagtt
atatctgaatttgctccgatatactgtgaggacaaaggtggggatattgttactcagttt
gacaaaggcgatgtagaagatgttggcttagtcaagtttgactttctaggtttaaaaaac
ttaacgataataaataacactattaaaagtattaatgctaagaaaaaagctggtgaacct
tttttaaatatttctgatattcctttagatgacaaattaacctataaacttttacaagct
ggtaatactacaggaatatttcagcttgaatcacaggggatgcgtcagatagttaaagat
cttggcacttcaaattttgaagagattattgcactagttgcgctataccgaccaggacct
atggaaaatatcccaatatttatagatcgaaaacatgggcgtaagcagatttcttattta
catcctttacttgaagtggtccttaaggaaacctacggtataccagtttatcaagagcaa
gtaatgcaaatggcacaaaaactagctggctacactctcggagcggcagaccttttacgt
agagcaatgggtaaaaagaaaccagaagagatggagcaacaacgtaagatttttaaagaa
ggtgctaaaaaatacaataacattgagtctagcttagctgatgaaatatttgaccagatg
gaagcttttgctggttatggttttaataaatcccatgctgctgcatatgctttgatagct
tatcaaactgcttggttaaaagcgcattatcctgatgaatatatggctgctctcatgtct
ggtgatatgggtaatactgatcagttagttaagtttattctagattgtaaaaacatggga
atatcagtccaagcccctaatataaacactagtgtatatgcttgtattgctgtttcaaaa
ggtactatattacttggcttaggagctataaaagggcttggtggagaagctatcaaaagt
attcttacggaacgggagttagcaggtaaattcagttcaatttttgatttatgtcgtaga
gtagatttacgtaaagtcaataaaaaagctcttgaggcgttatgttttgctggcgctata
aatggtatttcaaaaaacagagctacagcttttaattctatagaaaaagctataaaaaat
gccggttacgtcaacgagatgaatgctgctggtcaagatgatttgtttggctttacagaa
caagaaagtgatacagattctgaatttgaaaaagaatgtttcgcagaagaatggagctta
agggaattattaataaatgaaaaaaaagctttgggcatgtactttactggacatattctt
gatgaagaaagtcactggcgtaatcatgtaagttttagtgaccttgaaaaaatacaacgc
tcaaatatggatggaaattcagttagaattattgctagtatgataaccccggctattcgt
agaaagactaagactggtcgaattttgtatattatcaatattgatgatgaatttgataga
gtagattgtctagttagtgaagatatatttgcatctgttaaagacagtattagtgttgat
gatatagttgtggtagaaggtaaagttagccgagatatacagcgagagagaaataagcta
agtgttgataaagttcagccaatttctcaatatatagatgaaaattttagtaaagttagg
ctaacgttaaagggtgaaaatataaaccctactaatctgataaaagtccttaataacttt
aaaaataatatcaacctccataatgaacaaaaatcaaatattttagagatagttatatct
ttagacggagtagaagctaattttgatactttacagaaacctttctcaatatatgagttt
gttaatgatattagtagcttaatagcagaaggtagtacggttagtttggggtag
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