Allofrancisella frigidaquae: E3E15_04000
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Entry
E3E15_04000 CDS
T06608
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
afri
Allofrancisella frigidaquae
Pathway
afri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3E15_04000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afri03019
]
E3E15_04000
Enzymes [BR:
afri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3E15_04000
Messenger RNA biogenesis [BR:
afri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3E15_04000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
AAA_30
HI1480
P-loop_SecA
PH_NISCH_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIV95281
UniProt:
A0A6M3HYR4
LinkDB
All DBs
Position
complement(872022..873326)
Genome browser
AA seq
434 aa
AA seq
DB search
MQLGLSTQICKALETKGYTKPTPIQEKSIPLILKDNDLMASAQTGTGKTAAFTLPIIEKL
INQPKARSNTTKVLILTPTRELAAQIEDQVSIYAANTHIRSTVVFGGVSINPQMMKLRKG
VEILIATPGRLLDLYSQNAIRFTDLNTLVLDEADRMLDMGFIHDLKRIHKLLPKKIQTLM
FSATFSAEIKDLAQNFLNNPKSVSADVANTTVEKITQSIITVDKSQKVNALISLIKRDNW
NQVLVFSRTKHGANKIAEKLNDADIKASAIHGNKSQTARTKALADFKSNLITVLVATDIA
ARGIDIQQLPYVINLDLPNVAEDYVHRIGRTARAGQTGIAISLVSADEVEMLSNIEHLIG
HLLPREELEGFEAQHNVPTTSMSRKTKVKKIDEVKIIAAKRANKSKKSSTHNKDFSKLIR
QKIHANKSVKARQS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcaattagggctttcaacacagatatgtaaagctctagaaactaaaggttatacaaag
ccaacaccaattcaagagaaatctattcctcttatattaaaagataatgacttaatggca
agtgcgcaaactggtacaggcaaaaccgcagcatttacattaccaattattgaaaaatta
ataaatcagcctaaagctagatctaatacaactaaagttcttattctaacaccaacgagg
gaactagctgctcaaatagaagatcaagttagtatatatgctgcaaatacgcatatccgt
tctacagtagtatttggtggtgtaagcataaaccctcaaatgatgaaattaagaaaagga
gtagaaatcctaatagcgacacctggtagattactagacttatatagtcaaaatgctatt
agatttactgacttaaacaccttagttttggatgaagctgatagaatgcttgatatgggt
tttattcatgacttaaaaagaatccataagcttttgcctaagaagatacaaacactaatg
ttttcagctactttttctgcagagataaaagatctagcccaaaattttttaaataaccct
aaatctgtttctgctgatgttgctaatacaactgtagaaaaaataacccaaagtattata
actgtagataaatcacaaaaagttaatgctttgatatccctaatcaaaagggataattgg
aatcaagtattagtattttcacgtacaaaacatggagctaataagatagctgagaagctt
aatgatgcagatataaaagctagcgctatccatggcaataaaagtcaaactgccagaaca
aaagctttagcagattttaaatctaatctgataactgttttagtggctacagatatagcg
gctagaggaatagatattcagcagttaccatatgttataaacttagatttgcctaatgtt
gctgaagactatgtgcatcgtataggtagaacagcaagggcaggccaaactggaatagct
atatcattagtaagtgctgatgaagttgagatgctatcaaatatcgagcatctaatagga
cacttattacctcgtgaagagcttgaaggctttgaagctcaacataatgtacctactaca
agtatgagtagaaaaacaaaagttaaaaaaatagatgaagtaaaaattattgcagcaaaa
agagcaaataaaagtaaaaaatcatcaactcataacaaggatttctctaaactaattaga
caaaaaatccatgctaataagagtgtaaaggctaggcaaagttag
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