Allofrancisella frigidaquae: E3E15_04425
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Entry
E3E15_04425 CDS
T06608
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
afri
Allofrancisella frigidaquae
Pathway
afri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3E15_04425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afri03019
]
E3E15_04425
03009 Ribosome biogenesis [BR:
afri03009
]
E3E15_04425
Enzymes [BR:
afri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E3E15_04425
Messenger RNA biogenesis [BR:
afri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E3E15_04425
Ribosome biogenesis [BR:
afri03009
]
Prokaryotic type
rRNA processing factors
E3E15_04425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
KH_1
Flu_C_NS1
Antiterm
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QIV94644
UniProt:
A0A6M3HTP8
LinkDB
All DBs
Position
964790..967432
Genome browser
AA seq
880 aa
AA seq
DB search
MKKILINSKNSEEIRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDTPTGENIAHLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPEGGGISRRVEGEERERLKKYLKDLNIPKNMSVIARTACVECSFEELKYD
FDTLVELWQSITQAYHKIKKPALLHKESDIIVRTVRDHLKEDVKEIIIDSKECFDDVKRQ
LSLLRQSFDTNKVKLYNEELPLFTQHGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRSNKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYQNRKQVEEKL
MEALQQDRARIQMSRISKLGLIEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI
LRKIRAEAMKDDTNEIRVQVPVDIAAYILNEKRENIVDIERISNVKVMIIPNFNMESPKF
QMQRIWGASYKSNRTSPELIEDVYNLEIPKAGKKKVAAVDLTKAVETKVSEKKEQKQEDK
SYQPKESNTNSNTNNIKKKSLFAKLANVIFGTKDSAKTSETELNKKKDDKNHQQRNNQPN
KNKEDKAVEKIELNKPLSNTTRDNNSNGNNKKNRHERDNQHHKKNSYNNERNDRSNKTKK
NDDTDKRPPNKNNSRSSNININDAEEVVNITQLKYETQSIDNKIDLVKKVISKNPDEFVS
VMVKDILDNYNSLKCDGAKKVKTEEKVETQKYLKFDTVSVDAELANVTKNVNEKETQISI
EPETSSKEQTFIETTEGPKDTKKTEVKKTTLATSEEKVDTNLEEKGFNKNTKAKADSSKK
ITKAAKPAKEKAENKKVKQEPADGFINYSAAVDFESQKII
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatactaattaacagtaaaaatagcgaagaaattagaattgctactttagat
aacggtaaactaattgatctagacattgaaaacgttgatagagaacaaaaaaaagctaat
atctacaaaggttatatttcaagaatagaaccaagtttgaatgctatttttgtaaattat
ggtgaagaaaaaaatggttttttaccattcaaagaggtatctgaatactatttaaaagat
actcctacaggtgaaaatattgctcatcttttatctgagggtcaagaactaatagtacaa
atagacaaagaagaacgtggtgataaaggagctgctttgactacttttattacactagct
ggctcatatatggtgcttttaccaaataaccctgaaggtggtggtatttcacgtcgtgtt
gaaggtgaagaaagagaaaggttaaaaaaatatctcaaagatttaaatatccctaaaaac
atgagtgtaattgctagaacggcatgtgtggagtgttcttttgaggagttaaaatatgat
tttgatacactagttgaattatggcaatctatcacacaagcttaccataagataaaaaaa
cctgctctacttcataaagaaagcgacattatcgttagaactgttagagatcatttaaaa
gaagatgtaaaagagatcataatagatagtaaagaatgctttgatgatgtcaaaaggcaa
cttagcttactaagacaaagctttgacaccaacaaggttaaattatacaatgaagagcta
cctttatttactcaacatggtattgatcagcaaatagaaaatgcttacaaaagagaaata
cgtctaccttcaggtggttctatagtaatagatacaactgaagctttagtggctatagat
gtaaattcttccagatctaataaagctgaagatgttgaaactacagcctttaaaacaaac
ttagaagctgctgaggaagttgctaggcaacttagaatcagggatcttggtggacttgta
attgtcgattttattgacatgtctttttatcaaaatagaaaacaagttgaagaaaagctt
atggaagctttacagcaagatagagctcgtattcaaatgtctcgtatttctaagcttgga
cttattgaaatatcaagacaacgtctaagctcgtctataaatgaaagtgttatgcaaaag
tgtccacgttgtgaaggtcatggttttattaagaccactcaagctacagctcttacaata
ttacgtaaaattagagctgaagccatgaaggatgatactaatgaaattcgcgtacaagtt
cctgtagatatagctgcatatatactaaatgaaaaaagagaaaatatagttgatatcgaa
agaatatctaatgttaaagtcatgattattcctaactttaatatggaatctcctaagttc
caaatgcaaagaatttggggtgcaagctacaaatcaaatcgtacaagcccagagcttata
gaagatgtatataaccttgaaataccaaaagctggtaagaaaaaagtcgcagctgttgat
ttaactaaagctgttgaaaccaaagtttctgaaaaaaaagaacaaaaacaagaagataaa
agctatcagcccaaagaatctaatactaattctaatactaataatattaagaaaaaaagc
ttatttgctaaattagcaaatgtcatctttggtactaaagatagtgcaaaaacttctgaa
actgagctgaataagaaaaaagatgataaaaatcatcagcaaagaaataaccaacctaat
aaaaataaagaagataaagctgtcgagaaaattgagctcaacaaacctctaagtaataca
actagagataacaatagtaacggtaataataaaaaaaaccgccatgagcgtgataatcaa
catcacaaaaaaaatagttacaacaatgagcgtaatgatcgtagtaataaaactaagaaa
aatgatgatactgataaacgcccacccaacaaaaataatagcaggtctagcaacataaac
attaacgacgctgaagaagtggttaatataacacaattaaagtatgaaactcaatctatt
gacaataaaatagaccttgttaaaaaagttatctcaaagaacccagatgagtttgtctct
gttatggttaaagatattttagataactataatagtttaaagtgtgatggcgctaagaaa
gtaaaaaccgaagaaaaggttgaaactcaaaaatacctaaaatttgacactgtttctgtt
gacgcagaattagctaatgttactaaaaatgtaaatgaaaaagaaactcaaatcagtatt
gaacctgaaacaagttctaaagagcaaacttttattgaaactactgaaggacctaaagat
acaaagaaaacagaagttaaaaaaactactctagcaaccagtgaagaaaaagtagataca
aacttagaagaaaaaggctttaataaaaatacaaaagcaaaagcagattcttctaaaaaa
atcacaaaagccgcaaagcctgctaaagaaaaagctgaaaataaaaaagtaaagcaagaa
ccagctgatggatttataaattattctgctgctgtggactttgaatctcaaaaaataata
taa
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