Allofrancisella frigidaquae: E3E15_04540
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Entry
E3E15_04540 CDS
T06608
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afri
Allofrancisella frigidaquae
Pathway
afri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3E15_04540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afri03019
]
E3E15_04540
03009 Ribosome biogenesis [BR:
afri03009
]
E3E15_04540
Enzymes [BR:
afri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3E15_04540
Messenger RNA biogenesis [BR:
afri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3E15_04540
Ribosome biogenesis [BR:
afri03009
]
Prokaryotic type
rRNA helicases
E3E15_04540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Utp25_C
AAA_30
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIV94664
UniProt:
A0A6M3HTS4
LinkDB
All DBs
Position
complement(990499..992196)
Genome browser
AA seq
565 aa
AA seq
DB search
MNSETKKDFSSLGLDQNIVDTVMNLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNLDLNDKSRSPQILVLAPTRELAIQVAEQFEAFAKSVPSLSVACIYGGQEYGS
QIRALKNGVQVVVGTTGRVMDHIEKGTLKLDNLRALVLDEADEMLRMGFIDDVRWVLSHV
SDECQRLLFSATIPNDIADIIKEYLRNPCKIQVKATTKTANTITQKFIVVKGFKKIDALD
RLLEIEETDGVLIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRNSRSD
VLVATDVVARGIDLERISHVINYDMPNDEDTYVHRIGRTGRAGREGVSISLITLKEMRFL
RSLERFTNSKLQEMFMPGAKELADSRINNFKNRIISALEKNKSLDKYKEIILDIRDQLEL
DSEDLLAVLTLLAQDKKGFFPREIQAKEEKRAPAKRDDRSSKSSDRFNDRDRNNNSRFDK
KRPKRVDLDLTTYRIDVGRENDVQPRNIVGAIANEGGIDSKHICNISIEKDYTLVDLPAN
LSAKVINHLKKVWVAGKKLNLTEHR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagaaacaaaaaaagattttagctctttaggcttagatcaaaatattgtagat
actgttatgaatctagggtatgagaacccaacgccaattcaacagtatgctattccatat
atattatcgggtagagatgtgctaggacaagcacaaacaggtacaggtaaaacagcagct
tttgcgttaccattaataaataatttagatctgaatgataaaagcagatctcctcaaatt
ttagtattagcgccaactcgcgaattagctatacaagtagcagaacagtttgaagctttt
gcaaaaagtgttccgagcttgtctgttgcttgtatttatggtggacaagaatatggctca
caaataagagcacttaaaaatggtgtccaagtagtagtcggtactactggtagagttatg
gatcacatcgagaaaggaacactaaagctagataatctaagagcgttagtattagatgaa
gcagatgaaatgcttagaatgggttttattgacgatgttagatgggttttaagccatgta
tctgatgagtgccaacgactacttttttcagcaactataccaaatgatattgctgacatt
ataaaagaatatctaagaaatccatgcaaaatacaggttaaagcaacaactaaaacagct
aacactattacacaaaaatttatagtagttaaaggttttaaaaagatagatgctttagat
agactcctagaaatagaagaaactgatggcgtgctaatttttgttaaaactaagacaagc
acaatagaagttgctgataatttaaaagctcttggctataaagtagctgctataaatggt
gatatgcaacagtctcaaagagaatatattgttgatcaatttagaaattctagatctgat
gttttagtagcaactgatgttgtagctagaggtatagatcttgagcgtattagtcatgtg
attaactatgatatgcctaatgatgaagacacttatgtccacagaataggccgtactggt
agagcagggcgtgaaggcgtttctatctctttaataacgctaaaagaaatgcgattctta
cgttcgcttgagcgattcactaattcaaaactacaagaaatgtttatgccaggcgctaaa
gagcttgctgatagtagaatcaataattttaaaaatagaataatatctgctttggagaaa
aacaaatctttagataaatataaagaaataatacttgatatacgtgatcagctagaatta
gactcagaagatttattagcagtacttacgcttttagcacaagataagaaaggctttttc
ccaagggagatccaggctaaagaagaaaagagagctcctgctaaaagagatgatagatca
tccaaatctagtgataggtttaatgatagagacagaaataataactctaggtttgataaa
aagcgaccaaagcgagtggatctagatctaactacctatagaatagatgtgggtcgtgaa
aatgatgtacaaccaagaaatatagttggtgctatagcaaatgagggtggcatagatagt
aaacatatttgtaatatatctatagaaaaagactatactctagttgatttaccagctaat
ttgagtgcaaaagttataaatcatcttaaaaaagtttgggtagcaggtaaaaaattaaat
cttactgagcataggtag
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