Allofrancisella frigidaquae: E3E15_06560
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Entry
E3E15_06560 CDS
T06608
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
afri
Allofrancisella frigidaquae
Pathway
afri03030
DNA replication
afri03410
Base excision repair
afri03420
Nucleotide excision repair
afri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E3E15_06560 (polA)
03410 Base excision repair
E3E15_06560 (polA)
03420 Nucleotide excision repair
E3E15_06560 (polA)
03440 Homologous recombination
E3E15_06560 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afri03032
]
E3E15_06560 (polA)
03400 DNA repair and recombination proteins [BR:
afri03400
]
E3E15_06560 (polA)
Enzymes [BR:
afri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E3E15_06560 (polA)
DNA replication proteins [BR:
afri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E3E15_06560 (polA)
DNA repair and recombination proteins [BR:
afri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
E3E15_06560 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E3E15_06560 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
QIV95022
UniProt:
A0A6M3HXN9
LinkDB
All DBs
Position
complement(1403851..1406529)
Genome browser
AA seq
892 aa
AA seq
DB search
MKKIVLVDGSSYLFRAFHALPKLTNSQGEPTGAILGVINMIKKLPVMYQTEYIAVVFDPK
GKSFRHEIYPEYKANRKDMDDELRVQIKPLHEIIKKMGFPLIIKENVEADDVIGTLAKQL
EAQGYQVVISTGDKDMAQLVSENIMLYDSMKDATTDIPKVLEKYQVKPSQIIDYLALMGD
SSDNIPGVPKVGPKTAVKWLQEYKNIENIIVNKDKIAGKVGENLRNNIDLLRLSYQLATI
KCDLDLNISINELKCKEMDKETLHKFFVRYEFKSLLKALDIGVETVERKTVNIDYKTVFT
DKELESLVKILETKEGFAFDTETDSLDTYEANLVGLSFCAEEGQAYYIPLQHRYLGVPQQ
LELKTVLESLKPIFSNIKKFKVAHNFKFDEKVLSKYGVNIQGSIHDTMIMSYVLKSSGKH
DMDSVSKEYLDVEPIPYSAIAGTGRNQQTLDQVEIDKVAKYAAEDADITFRLYNFLKVLL
EKEETLNKLYFKIEMPLTLILNQMEKLGVKIDADKLIRHSQELENSIKELEKKCFKLCGQ
EFNLSSPVQLREVLFEKMGLPAVKKTAKGQASTSEEVLTQLAQEYEVADLIMKYRHLCKL
KNTYTDKLPAMLDKNSRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSSEGRKIREAFIAEE
GNYIVAADYSQIELRIMAHLSKDENLLKAFRQGLDIHRATAAEVLGISIADVTNEQRRRA
KAVNFGLIYGMSAFGLAKQLEISRSEAQEYIETYFSRYPGIKEYMNTAKKVAQESGYVET
TLGRRLYLPEINARNVMQRNAAERAAINAPMQGTAADIIKKAMIDVSTKLVQDYNQDVKM
IMQVHDELVFEVTKDKIDDVCKQIKGIMEQAIMLSVPLEVNVGFGDNWDQAH
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatagttttggttgatggttcgtcatatttatttagagcctttcacgcgcta
ccaaagctcactaatagtcaaggtgagcctacaggggcgatcttgggtgtaatcaatatg
attaaaaaactaccagtaatgtatcaaacagaatatattgcagtagtatttgatcccaaa
ggtaagagttttcgtcacgaaatttatccagaatataaggcaaaccgtaaggatatggat
gacgaactaagggttcaaattaagcctttacatgaaataatcaaaaaaatgggttttcct
cttattatcaaagaaaatgtcgaagcagatgacgtgataggtactttagcaaaacagctt
gaagctcaggggtatcaggtggttatttctactggtgataaagatatggctcagctggta
agtgaaaatataatgctatatgactcaatgaaagacgctacaacagatattcccaaggtt
ttagaaaagtatcaagttaaacctagccagattatagattatttagctttaatgggagat
tcttcagataatattcctggggttccaaaagttggtccaaaaacagcagttaagtggtta
caagagtataaaaatattgaaaatattatagtaaacaaagataaaatagcaggcaaagtt
ggtgagaatttgcgtaacaatattgatcttcttaggttatcttatcaattagctactata
aaatgtgaccttgacctgaatatttctataaatgagctaaaatgtaaagaaatggataaa
gaaactttacataaattttttgtaagatacgaatttaaatctcttttaaaagctctagac
attggtgtagaaactgtggaaagaaaaaccgtaaatattgattataagacagtttttaca
gataaagagttagaaagtttggtgaaaattttagaaactaaagaaggttttgcatttgat
actgaaacagattcattagatacttacgaagcaaatctggtagggctttctttttgtgct
gaagaaggccaagcatattatatccctttacaacatagataccttggagtgccgcaacag
cttgagttaaaaactgtattggagtccctaaaaccaatattctctaacataaagaagttt
aaagtcgctcataattttaagtttgatgaaaaagttttatcaaaatatggagttaatatt
caaggaagtattcatgatactatgattatgtcttatgtactaaaaagtagtggtaagcat
gatatggatagtgtctccaaagagtatcttgatgtcgagcctatcccttatagtgcaata
gctgggactggtagaaaccagcaaactttagaccaagtggaaatcgacaaagtagctaag
tacgccgctgaagatgcagatattactttcagattatataattttctaaaagttttattg
gaaaaagaagagacacttaataagctgtattttaaaatagaaatgccattgaccctaatt
ttaaatcaaatggaaaaattgggtgtcaagatagatgctgataagttaattagacatagt
caagagcttgaaaatagtattaaagagctagaaaaaaagtgttttaagttgtgtggacaa
gagtttaatttatcttcaccagtgcaattaagagaagtactatttgaaaaaatggggttg
ccagcagttaaaaaaactgcaaaaggtcaggcttcaacttcagaagaggtacttacacaa
ttagctcaagaatatgaagtggctgatttaattatgaaatatcgccacctttgtaagtta
aaaaacacttatactgataagttgccagctatgcttgataagaattcaagagtacatacc
tcatataaccaaacaggcactgtaacaggtagactatcttcatctgatcctaatttacag
aatattccgattaaaagttctgaaggtagaaaaataagagaagcctttatagcagaagag
ggtaattatatagttgcagcagactactcacagatagagcttaggattatggctcattta
tccaaagatgaaaaccttcttaaagcttttagacagggcttagatatacaccgtgcaacg
gctgcagaggttttagggataagcatagctgatgtaacaaatgagcaaagaagaagagca
aaagctgtaaatttcggtttgatttatgggatgagtgcatttggattggcaaaacagctg
gaaatttctagaagtgaggctcaagaatatatagaaacatattttagtcgctacccgggg
attaaggaatatatgaatacagcaaaaaaagttgctcaagaaagtggctatgtagaaact
acattaggaagaaggttatatttaccagagataaacgcgagaaacgttatgcaacgtaat
gctgctgaaagagcagctattaacgctccaatgcaaggcacagcggcagacattattaaa
aaagcaatgatagatgttagtactaagcttgttcaagattacaatcaagacgttaaaatg
ataatgcaggttcacgatgagcttgtatttgaagttacaaaagataagatagatgatgtt
tgcaagcagataaaaggtataatggagcaagcaatcatgcttagcgtgccacttgaggta
aacgtaggatttggagataactgggatcaagcacactag
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