Allofrancisella frigidaquae: E3E15_06840
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Entry
E3E15_06840 CDS
T06608
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
afri
Allofrancisella frigidaquae
Pathway
afri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E3E15_06840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afri03021
]
E3E15_06840
03400 DNA repair and recombination proteins [BR:
afri03400
]
E3E15_06840
Enzymes [BR:
afri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E3E15_06840
Transcription machinery [BR:
afri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E3E15_06840
DNA repair and recombination proteins [BR:
afri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E3E15_06840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_A_bac
RNA_pol_L
HHH_XRCC3_RpoA
DUF4094
POLH-Rev1_HhH
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
QIV95071
UniProt:
A0A6M3HY69
LinkDB
All DBs
Position
complement(1472503..1473474)
Genome browser
AA seq
323 aa
AA seq
DB search
MSNNNLKQEFTPSVRLIEELGAFGYKVQLSPVEKGMAHILGNSIRRVLLSSLPGASIVKV
NIKGVLHEYSTLDDVKEDIVEVVSNLKKVAVKLDENVDNVELELSVNKSGVVTAGDFKVT
GGVEIINKDQVIATLTNKRELNLVASVVWGRNVGILSAMPAELEKVGDIAVDADFNPAKK
VAFEVIENDDSEVLEIFLKTNGTIEPLEAVTKSLEYFCEQMSVFVSLKVPNHSKIGDALI
DSNIDPILLKPIDDLELTVRSSNCLRAENIKYLGDLVQYSESQLMKIPNLGKKSLNEIKQ
ILIDNNLSLGVVIDNFRELVEGK
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaataataatttgaaacaggaatttacacctagtgtacgacttatagaagaattg
ggtgcttttggatataaggtgcagctttctcctgtggaaaaaggtatggctcatattctt
ggtaactcaatcagaagggttctgctttcatctttgcctggagcatctatagttaaagta
aatataaaaggtgttttgcatgaatactctacattagatgatgttaaggaagacattgtt
gaagtagtttcaaatttaaaaaaagtagcggtaaagcttgatgaaaatgttgataatgtt
gaactagagctatcagttaataaaagtggcgttgttacagcaggcgactttaaagttact
ggtggagttgagattataaataaagatcaagtgatcgcaactttaacgaataagagagaa
cttaatttggtagctagcgttgtttggggaagaaacgttggtattctttcagcgatgcct
gctgaattagagaaagtaggtgatatagctgtagatgctgattttaacccagctaaaaag
gtagcctttgaagttattgagaatgatgatagtgaagtattagaaatatttctaaaaaca
aacgggactatagaaccattagaagctgttacaaaatcgttggaatacttttgtgaacaa
atgtcagtatttgtttctttaaaggtgccaaatcacagtaagatcggagatgctttaata
gattctaatattgacccgatacttcttaagccgatagatgatttagaacttacagttaga
tcatctaattgtttacgggctgaaaatattaagtatttaggagatctagttcagtattct
gagtcgcaactaatgaaaatacctaacctaggtaaaaaatctcttaatgaaattaagcag
atacttatagataacaacttatctctaggagttgtaattgataattttagagaattagtt
gaaggtaaataa
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