Actinoplanes friuliensis: AFR_04465
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Entry
AFR_04465 CDS
T02892
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
afs
Actinoplanes friuliensis
Pathway
afs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFR_04465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afs03021
]
AFR_04465
03400 DNA repair and recombination proteins [BR:
afs03400
]
AFR_04465
Enzymes [BR:
afs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFR_04465
Transcription machinery [BR:
afs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFR_04465
DNA repair and recombination proteins [BR:
afs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFR_04465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGZ39182
UniProt:
U5VQU8
LinkDB
All DBs
Position
985287..989177
Genome browser
AA seq
1296 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVITSVDAEARHRDMSTIENEIFAEKRQSENSRDSEIEKRAAKLEQD
LAELEAEGAKADVRRKVKEAGEREMRQIRDKAQREIDRLDEVLDTFRKLDSKQLVTDELL
YRELRDRFGEYFTGGMGAEAIKALLENMDLDAEAESLRETIRSGKGQRKIRALKRLKVVA
AFLNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPRLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
AVVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYYLTHLTKGAKGEGR
VFSSDAEARMAFDNGELHLQALVKIRLPEVLEVDNGAGSPTWARPEGWESGDKLLVETTL
GRVLFNETLPPGYRYVNYEIRKGQLSAIVNDLAERFPKVALAATLDALKEAGFHWATWSG
VTIGMGDVIGPPRKPEIIARYQGEADRIDKQYQRGLMTAEERRGELIDIWTNATKDISKE
METALPQENPLWVMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPITSSYREGLTVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMTVSDREPDG
SLVVHTHAETGVHARTIADDITGPDGNIVVTRGEDLNSILVDKLVAAGVETVRVRSVLTC
ESKLGVCAACYGRSLPTGKAVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQG
LPRVQEIFEARVPKGKAPIADTPGRVRIEDGERSRKIIVIPDDGSEEIVYDKISKRVKLR
AHDGDHVAVGEKLTEGTIDPHELLRIMGPRAVQVHLTSEVQEVYRSQGVLIHDKHIEIII
RQMLKRVTVIDSGAAEFLPGILVDRALFESENRRIVGEGGEPAAGRPVLMGITKASLATD
SWLSAASFQETTRVLTDAAINSRSDSLVGLKENVIIGKLIPAGTGISKYRNIRVEPTEEA
KAKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagttgcgcatcggccttgctaccgctgacgacatc
cgccagtggtcgcacggtgaggtcaagaagcccgagacgatcaactaccgcacgctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtcctcagcgggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccggtccaaggtccgccgtgagcgcatgggccacatcgagctcgccgcgtcg
gtcacgcacatctggtacttcaagggtgtgcccagccggctcggttacctgctcgacctg
gcgcccaaggatctcgagaagatcatctacttcgcctcgtacgtgatcacgagcgttgac
gccgaggcgcgtcaccgcgacatgtccacgatcgagaacgagatcttcgccgagaagcgg
cagtccgagaacagccgcgactccgagatcgagaagcgtgccgccaagctggagcaggac
ctggccgagctcgaggccgagggtgccaaggcggacgtgcgccgcaaggtcaaggaggcc
ggcgaacgcgagatgcgccagatccgtgacaaggcgcagcgcgagatcgaccggctcgac
gaggtgctcgacaccttccgcaagctcgacagcaagcagctcgtcaccgacgagttgctc
taccgcgagctgcgtgaccggttcggcgagtacttcaccggtggcatgggcgccgaggcg
atcaaggccctgctggagaacatggacctcgacgccgaggccgagtcgctgcgcgagacc
attcgcagcggcaagggccagcgcaagatccgtgccctcaagcggctcaaggtcgtcgcc
gcgttcctgaacacccggaactcgccgctcggcatggtgctcgactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgaccagcgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgca
ctgttcgacaacggccgtcgtggccggccggtcaccggtccgggtaaccgcccgctcaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccggcagaacctgctcggcaag
cgtgtcgactactccggccgttccgtcatcgtcgtcggcccccggctcaagctgcaccag
tgcggcctgccgaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcggatggtcgagcgtcagcgc
gccgtcgtgtgggatgtcctcgaagaggtcatcagcgagcacccggtgctgctgaaccgc
gcgccgaccctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggcaag
gcgatccagatccacccgctcgtctgcacggcgttcaacgccgacttcgacggtgaccag
atggcggtccacgtgccgctgtcggccgaggctcaggccgaggcccggatcctgatgctc
tcgtcgaacaacatcctcaagccggccgacggcaagcccgtcaccatgcccacccaggac
atggtcatcggcctctactacctgacgcacctgaccaagggtgcgaagggtgagggccgg
gtcttcagctcggacgccgaggcacggatggcgttcgacaacggcgagctgcacctgcag
gcgctcgtgaagatccgcctccccgaggtgctcgaggtcgacaacggcgcgggttctccc
acctgggcgcggcccgagggctgggagtcgggcgacaagctgctcgtcgagaccaccctg
ggacgggtgctcttcaacgagacgctgccgccgggctaccgctacgtcaactacgagatc
cgcaagggtcagctctccgcgatcgtcaacgacctcgccgagcgcttccccaaggtcgct
ctggcggcgaccctggacgcgctcaaggaggccggcttccactgggccacatggtccggt
gtgacgatcggtatgggcgacgtcatcggccctccgcgcaagccggagatcatcgcccgc
taccagggcgaggccgaccgcatcgacaagcagtaccagcgtggtctgatgaccgccgag
gaacgtcgcggcgagctcatcgacatctggaccaacgcgaccaaggacatctcgaaggag
atggagacggcgctgccgcaggagaacccgctctgggtcatgatcaactccggcgcccgc
ggtaacctcctccagctccgtcagatcgccgcgatccgtggtctggtggccaaccccaag
ggcgagatcatcccgcgcccgatcacctcgtcgtaccgcgagggtctgaccgtgctggag
tacttcatctccacgcacggtgcccgtaagggtctggccgacaccgcgctgcgtaccgcc
gactcgggttacctgacccggcgtctggtggacgtgtcgcaggacgtcatcatccgcgag
gaggattgcggcaccgaccgcgcgatcccgatgacggtcagcgaccgcgagcccgacggc
agcctcgtcgtgcacacgcacgccgagaccggcgtccacgcccgcacgatcgcggacgac
atcacgggccccgacggcaacatcgtcgtgacgcgtggtgaggacctcaactcgatcctg
gtcgacaagcttgtcgccgccggggtggagacggtccgggtgcgcagcgtcctgacctgc
gagtcgaagctcggcgtgtgcgcggcctgctacggccgttcgctgccgaccggcaaggcg
gtcgacatcggcgaggccgtcggcatcatcgcggcccagtccatcggtgagcccggtacg
cagctgacgatgcgtaccttccacaccggtggtgtcgcgggtgaggacatcacccagggt
ctgccgcgtgtgcaggagatcttcgaggcccgcgtgccgaagggtaaggcgcccatcgcc
gacaccccgggacgcgtccgcatcgaggacggcgagcgttcgcggaagatcatcgtgatc
ccggacgacggcagcgaggagatcgtgtacgacaagatctccaagcgcgtcaagctgcgg
gcccacgacggcgaccacgtcgcggtcggcgagaagctcaccgagggcaccatcgatccg
cacgagctgctgcgcatcatgggtccgcgtgcggtccaggtccacctgaccagtgaggtc
caggaggtctaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatcatt
cgccagatgctcaagcgcgtgacggtcatcgactcgggtgccgcggagttcctgccgggc
atcctggtcgaccgggcgctcttcgagtcggagaaccgccggatcgtcggcgagggtggc
gagcccgccgccggtcgtccggtgctgatgggtatcaccaaggcctcgctggcgaccgac
tcctggctctcggcggcctccttccaggagaccacccgggtgctcaccgacgctgcgatc
aactcgcgcagcgactcgctggtgggcctcaaggagaacgtcatcatcggcaagctcatc
ccggccggtacgggcatcagcaagtaccgcaacatccgggtcgagccgaccgaggaggcc
aaggccaaggtgtactcgatgaccgggtaccccgagaccgactacggcttcgggccggcc
agcgggcaggctgtgccgctggacgacttcgacttcgggtcgtaccgctaa
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