Actinoplanes friuliensis: AFR_21285
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Entry
AFR_21285 CDS
T02892
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K02405
RNA polymerase sigma factor FliA
Organism
afs
Actinoplanes friuliensis
Pathway
afs02020
Two-component system
afs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
afs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AFR_21285
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AFR_21285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afs03021
]
AFR_21285
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
afs02035
]
AFR_21285
Transcription machinery [BR:
afs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AFR_21285
Bacterial motility proteins [BR:
afs02035
]
Flagellar system
Flagellar assembly proteins
Stator
AFR_21285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
Rv2175c_wHTH
Motif
Other DBs
NCBI-ProteinID:
AGZ42529
UniProt:
U5W068
LinkDB
All DBs
Position
4633872..4634732
Genome browser
AA seq
286 aa
AA seq
DB search
MSAKTKTVSRELENMIRENMPLVGHLVREMLFKVPAHVHRDDLASAGYAALVTAAQAFDT
SRGIPFGRFAAVRVRGALLDELRSMDWASRSVRARARRAEVARQELTAQLGRTPNPTELA
ELLGVGVAELANVDDDVQRAAVLSLQGFTAGSADDMVTEDSMNPEETLLHRERIGYLHDA
VAVLPERLRFVVEASFLRERPLSEVAAELGVTESRVSQLRTEALALLKDGLTTHMDQQDT
GAAKSDGCVARRRAAYAAQIAARSTMATRLAVTDVQGLHSSVGYAA
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgaagacgaagaccgtcagccgcgagctggagaacatgatccgcgagaacatg
ccgctggtcgggcacctggtccgcgagatgctgttcaaggtccccgcacacgtccaccgt
gacgatcttgcctcggccgggtacgccgccctggtcaccgccgctcaggcgttcgacacc
tcgcgggggatcccgttcggccggttcgcggcggtgcgggtccggggtgcgctgctggac
gagctgcggagcatggactgggccagccggtcggtgcgggcccgggcccgccgggccgag
gtcgcccgccaggagctgaccgctcagctgggccggaccccgaacccgacggagctcgcc
gagctgctgggtgtcggtgtcgccgagctggcgaacgtcgacgacgacgtgcagcgcgcc
gcggtgctgtcgctgcagggtttcaccgccggctcggccgacgacatggtcaccgaggac
tcgatgaaccccgaggagacgctgctgcaccgggagcggatcggctacctgcacgatgcc
gtggccgtgctgccggagcggctgcggttcgtcgtcgaggcgtcgttcctgcgggagcgt
ccgctgtcggaggtcgccgccgagctgggtgtgaccgagtcgcgggtgtcgcagctgcgt
accgaggcgctggccctgctcaaggacggtctgacgacgcacatggaccagcaggacacc
ggtgcggccaagtccgacggttgtgtcgcgcggcgccgggccgcctatgccgcgcagatc
gctgcccgcagcacgatggcgacccggctggccgtgaccgacgtccagggtctgcactcc
tcggtgggttacgccgcctga
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