Actinoplanes friuliensis: AFR_27015
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Entry
AFR_27015 CDS
T02892
Name
(GenBank) putative ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
afs
Actinoplanes friuliensis
Brite
KEGG Orthology (KO) [BR:
afs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afs03019
]
AFR_27015
Enzymes [BR:
afs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AFR_27015
Messenger RNA biogenesis [BR:
afs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AFR_27015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
APHB_HrpA
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
NACHT
AAA_16
ABC_tran
SLFN-g3_helicase
T2SSE
AAA_30
AAA_23
ResIII
PhoH
Motif
Other DBs
NCBI-ProteinID:
AGZ43664
UniProt:
U5W3G6
LinkDB
All DBs
Position
complement(5856417..5860340)
Genome browser
AA seq
1307 aa
AA seq
DB search
MSVTPIQDPAELRRRASDLLPRDERRLQRRIEGTRRIRDELARAAVLTEIAAEITQAEQR
REARLANVPPITYPEELPVSQRRDDILAAIRDHQVVVIAGETGSGKTTQLPKICLELGRG
VRGQIGHTQPRRIAARTVAERIAEELGTPLGSTVGYKVRFTDQVTDETMVKVMTDGILLA
EIQNDRMLRRYDTLIIDEAHERSLNIDFILGYLAQLLPQRPDLKLIITSATIETQRFAEH
FAGPAGPAPVIEVSGRTYPVEVRYRPLVETTGEEDEESREEPVDQVDGIAAAVDELGAES
SGDILVFLSGEREIRDTADALNRRDLKNTEIVPLYGRLSAAEQHKVFQRHTGRRVVLATN
VAETSLTVPGIRYVIDPGTARISRYSSRLKVQRLPIEAVSQASANQRKGRCGRTSDGICI
RLYSEEDFESRPAFTEPEILRTNLASVILQMTSLGLGDLAAFPFIDPPDKRNVTDGVKLL
EELGALEQRKLTPMGRQLAQLPVDPRLARMVIEADKQDCLAEVMVITAALSIQDPRERPA
DKQQLADEKHGRFADKESDFFSYLNLWRYLREKQRELSGNQFRRLCRSEYLNYLRVREWQ
DIYSQLRQVARTLGLTLTERDELAAGQAVHTAMLSGLLSHIGLKDTDKREYLGARGAKFA
IFPGSALFRKQPRWVMSAELVETSRLWGRVNARIEPEWAEKLAPHLVKRSYSEPHWEKNQ
GAVMAYEKVTLYGLPIVPRRKVGYSKVDPAMCRELFIRHALVEGDWETHHKFFAENTKLL
ARIEEIENRARRRDIAVDDETVYALYDARIPADVVSARHFDAWWKKARHDDPNLLTFTRE
LLVNAGRDAVDPGAYPDAWLADGVRLPLSYQFEPGAAADGVTVQVPLALLNKLDADDFGW
SVPGLRKEVVVALIRALPKHLRTSFVPVPDWAEAVLSRVPARRGSLPDAVGGELRRLTGT
MVPRDAWRPDQVPDHLKMNFRVVNEDGAVVGQGRDLDVLRASLAPKVQATISAAAGAIER
RGITTNDFGTLPRSVAQVRGGYEVTVYPALTDEKDSVAVRVFETEAEQREAMRAGTRRLL
MLTLPPAARFLQGRLDNRAKLELSRGNPYKSIADLLDDCAGAAVDKLVADAGGPAWSKEA
FAQLRDEVRADLVDAVANVVTQVRAVLATAYEVDQRLAGTRDPSLVPALADIRQQLKGLV
HPGFVTETGWKQMHHLPRYLRGIMHRLDRLGGTLARDRQLMAQIHEIEQEYRELRAELPA
GGPADEGLREIRWMIEELRINFFAQALGTAYPVSDKRIYKAMDQLPA
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaacgcccatccaggaccccgccgagctccgccgccgcgcgtccgacctcctt
ccccgcgacgagcgccgtctccagcgccggatcgagggcactcgccgcatccgcgacgag
ctcgcccgcgccgccgtgctcaccgagatcgccgccgagatcacccaggccgagcagcgc
cgtgaggcgcggctggcgaacgtcccgccgatcacctatccggaagagctgccggtcagt
cagcgccgcgacgacatcctcgccgcgatccgcgaccaccaggtcgtggtgatcgcgggc
gagacgggctcgggcaagaccacccagctcccgaagatctgcctggagctgggccgcggt
gtgcgcggtcagatcgggcacacccagccgcggcggatcgccgcgcgcacggtcgccgag
cgcatcgccgaggagctcggcaccccgctggggtcgaccgtcggttacaaggtccgcttc
accgaccaggtcaccgacgagaccatggtcaaggtcatgaccgacggcatcctgctcgcc
gagatccagaacgaccggatgctgcgccggtacgacaccctgatcatcgacgaggcgcac
gagcgcagcctcaacatcgacttcatcctcggctacctcgcgcagctgctgccccagcgt
cccgacctcaagctgatcatcacgtcggccacgatcgagacccagcggtttgccgagcac
ttcgcgggtcccgccggcccggcgccggtcatcgaggtctcgggccggacctatccggtc
gaggtccggtaccgcccgctggtcgagacgaccggcgaggaggacgaggagtcccgggag
gagccggtcgaccaggtcgacggcatcgccgccgcggtcgacgagctcggcgccgagagc
agtggcgacatcctggtcttcctcagcggcgagcgggagatccgcgacaccgccgacgcc
ctcaaccgccgcgacctgaagaacaccgagatcgtcccgctctacggccggctctccgcg
gccgagcagcacaaggtcttccagcggcacaccggccgccgcgtcgtgctggccaccaac
gtcgccgagacgtccctgacggtccccggcatccggtacgtcatcgaccccggtaccgcc
cgcatctcgcggtacagcagccggctcaaggtgcagcggctgccgatcgaggccgtctcg
caggccagcgccaaccagcgcaaggggcgctgcgggcggacgtcggacggcatctgcatc
cggctctactcggaggaggacttcgagtcgcggccggcgttcaccgagccggagatcctg
cggaccaacctcgccagcgtcatcctgcagatgaccagtctcggcctcggcgatctggcc
gcgttcccgttcatcgacccgccggacaagcgcaacgtcaccgacggtgtgaagctcctg
gaggagctcggcgcgctggaacagcgcaagctgaccccgatgggccggcagctcgcccag
ctgcccgtcgacccgcggctggcccgcatggtcatcgaggcggacaagcaggactgcctg
gccgaggtcatggtcatcaccgcggcgctgtccatccaggacccgcgggagcggcccgcc
gacaaacagcagctcgcggacgagaagcacggccggttcgccgacaaggaatccgacttc
ttcagctacctcaacctctggcggtacctgagggagaagcagcgcgagctgtccggcaac
cagttccgccgtctgtgccgcagtgaatacctcaactacctgcgggtccgcgagtggcag
gacatctactcgcagctgcggcaggtcgcccgtacgctcgggctgaccctcaccgagcgt
gacgagctcgccgcgggccaggccgtgcacacggccatgctgtccggtctgctctcgcac
atcggcctcaaggacaccgacaagcgtgaatacctgggtgcccggggtgccaagttcgcg
atcttcccgggctcggcgctgttcaggaaacaaccgcgctgggtgatgtcggccgagctg
gtcgagacgtcgcggctctggggccgggtgaacgcgcgcatcgagccggagtgggccgag
aagctcgctccgcacctggtcaagcgcagttacagcgagccgcactgggagaagaaccag
ggcgccgtgatggcgtacgagaaggtgaccctctacgggctgccgatcgtgccccggcgc
aaggtcggttacagcaaggtcgacccggcgatgtgccgtgagctcttcatccgccacgcg
ctggtcgagggcgactgggagacccaccacaagttcttcgccgagaacaccaagctgctg
gcgcgcatcgaggagatcgagaacagggcgcggcgccgcgacatcgccgtcgacgacgag
accgtgtacgccctctacgacgcccgcatccccgccgacgtggtctcggcccggcacttc
gacgcctggtggaagaaggcccgccacgacgacccgaacctgctcaccttcacccgtgag
ctgctggtcaacgcgggccgcgacgccgtcgacccgggcgcgtacccggacgcctggctc
gccgacggcgtccgcctgccgctgagctaccagttcgagccgggcgcggccgccgacggt
gtgaccgtgcaggtgccgctggcgctgctcaacaagctcgacgccgacgacttcggctgg
tcggtgcccggcctgcgcaaggaggtcgtggtggcgctgatccgggcgctgcccaagcac
ctgcggaccagcttcgtgcccgtgccggactgggcggaggccgtgctgagccgggtgccc
gcccgccggggttcgctgcccgacgcggtcggcggtgagctgcgccggctgaccggcacg
atggtgccgcgggacgcctggcgtcccgaccaggtgcccgaccacctcaagatgaacttc
cgggtggtcaacgaggacggcgcggtggtcggtcagggccgcgacctcgacgtgctgcgt
gcgagtctcgcgcccaaggtgcaggcgaccatctcggccgccgccggtgccatcgagcgc
cgcggcatcacgacgaacgacttcggcaccctgccgcgctcggtcgcccaggtccgcggt
gggtacgaggtcacggtctatccggcgctgaccgacgagaaggacagtgtggccgtccgc
gtcttcgagacggaggccgagcagcgtgaggcgatgcgggccggcacccggcgtctgctg
atgctcaccctgccgccggcggcccggttcctgcagggccgcctcgacaaccgcgccaag
ctggagctgtcccgcggcaacccgtacaagtcgatcgccgatctgctggacgactgcgcg
ggtgcggccgtcgacaagctggttgccgacgcgggtggtccggcctggtccaaggaggct
tttgcccagctgcgcgacgaggtccgcgccgacctggtcgacgccgtcgccaacgtcgtc
acgcaggtgcgggcggtgctcgccacggcgtacgaggtggatcagcggctggccggcacc
cgcgacccgtccctggtgccggcgctggccgacatccggcagcagctcaagggcctggtc
catccggggttcgtcaccgagaccggctggaagcagatgcatcacctgccgcggtatctc
cgcggcatcatgcaccggctggaccggctcggcggcaccctggcccgggaccggcagctg
atggcgcagatccacgagatcgagcaggagtaccgcgagctgcgggccgagctgcccgcc
ggtggaccggccgacgaggggctgcgggagatccgctggatgatcgaggagttgcggatc
aacttcttcgcccaggccctcggtaccgcgtaccccgtttcggacaaacgcatctacaag
gccatggaccaactgcccgcgtag
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