Actinoplanes friuliensis: AFR_37450
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Entry
AFR_37450 CDS
T02892
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
afs
Actinoplanes friuliensis
Pathway
afs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFR_37450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afs03021
]
AFR_37450
03019 Messenger RNA biogenesis [BR:
afs03019
]
AFR_37450
Transcription machinery [BR:
afs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AFR_37450
Messenger RNA biogenesis [BR:
afs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AFR_37450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
NACHT
VWA_2
S1CSD-TOTE-2
Exo70_N
Motif
Other DBs
NCBI-ProteinID:
AGZ45744
UniProt:
U5W9C5
LinkDB
All DBs
Position
complement(8174040..8176241)
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AA seq
733 aa
AA seq
DB search
MSDTTDVTSGVSDVADDGATTAAVTKRRRGGTGLSAMLLPELQSLAASLGISGTARMRKG
ELITAISERQNGGAPAAPAKSTPRTRSTNGSAAAAAVVEPVTAPPVAAPVAKAPPAQAAA
VQAPAVQASAAQPEAAQAPAVQAQAPAAQAPVAEAAPSVADRSAAPATTEQPATEGESGR
RSRRDQNRDNAPADGQGDGERTERTDRGDRPERGERNRDRQRNPRSEGGERNDRNDRGDR
PDRGERNDRGPRTENGPRNDNGPRNDNGPRNDNAPRNDNAPRNDNGPRNDSNDDEDGDNG
EGGRRSRRSRFRDRRRGRDRDGEAGGGGGRDGGREGGRDSGRDGGREPHVNDDDVLVPVA
GILDVLDNYAFVRTTGYLSGPNDVYVSMSQVKKHGLRRGDAVTGAVRAAPRNEGSGDQRR
DKYNPLVRLDTINGMEPEEARRRPEFYKLTPLYPQERLRLETEAHILTTRVIDLVMPLGK
GQRALIVSPPKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAA
TFDRPPQDHTTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAAPASGRIMSGGID
STALYPPKRFLGAARNIENGGSLTILATALVETGSMMDTVIFEEFKGTGNAELKLDRKIA
DRRTFPAIDIHPSGTRKEEILLGKEELAIVHKLRKVLSSLESSAALDLLLDRLKQSRTNI
EFLMQIAKSTPGE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacaccaccgacgtgacgtcgggtgtttctgacgtcgctgacgacggcgccacc
accgcggctgtcaccaagcgtcgtcgtggcggcaccgggctgtcggcgatgctgctgccc
gagttgcagagtctcgccgcgtccctcggcatctccggcaccgcgcggatgcgcaagggc
gagctcatcaccgccatctcggagcgtcagaacggcggggctccggccgcgcccgccaag
agcaccccccgtacgcgcagcacgaacggctccgccgctgctgcggcagttgtcgagccc
gtgacggctccgccggtcgccgcccccgtggcgaaggccccgccggcgcaggccgctgca
gtgcaggccccggctgttcaggcttccgctgcccagcccgaggctgctcaggccccggcc
gtccaggctcaggctccggctgctcaggcccctgtggccgaggccgccccgagcgtcgct
gaccggtccgcggctcccgcgacgaccgagcagcccgcgaccgagggtgagtccggccgc
cgcagccgccgcgatcagaaccgtgacaacgctccggccgacggccagggcgacggcgag
cgcaccgagcggaccgatcgcggtgaccggcccgagcgtggcgagcgcaaccgggaccgt
cagcgcaacccgcggtccgagggcggcgagcgcaacgaccggaacgatcgcggggatcgc
cccgatcgtggcgagcgcaacgaccgcggcccgcgcaccgagaacggcccgcggaacgac
aacgggccccggaacgacaacggtccgcggaacgacaacgcgccccgcaatgacaacgcg
ccgcgcaacgacaacggtccgcgcaacgacagcaacgacgacgaggacggcgacaacggc
gagggcggtcggcgcagccggcgcagccggttccgtgaccgccgccgtggccgcgaccgt
gacggcgaggccggtggcggtggtggccgcgacggcggccgtgagggcgggcgcgacagt
ggccgcgacggtggccgcgagccccacgtcaacgacgacgacgtcctcgtgccggtggca
ggcatcctcgacgtgctggacaactacgcgttcgtccgcacgacgggttacctctccggc
cccaacgacgtctacgtctcgatgtcgcaggtcaagaagcacgggctgcgccgcggtgac
gcggtcaccggcgccgtgcgggcggccccgcgcaacgagggcagtggcgaccagcgccgc
gacaagtacaacccgctggtccggctggacaccatcaacggcatggagcccgaggaggcc
cgccggcgtcccgagttctacaagctgaccccgctgtacccgcaggagaggctgcgtctc
gagaccgaggcgcacatcctcaccacgcgggtcatcgacctggtcatgccgctcggcaag
ggccagcgcgccctgatcgtctcgccgccgaaggccggtaagacgatggtgctgcaggcg
atcgccaacgcgatcacccacaacaaccccgagtgccacctgatggtcgtgcttgtcgac
gagcgccccgaagaggtcaccgacatgcagcgctcggtcaagggcgaggtcatcgcggcc
acgttcgaccggccgccgcaggaccacaccacggtcgccgagctggcgatcgagcgggcc
aagcgcctggtcgagctgggccacgacgtggtcgtgctgctcgactcggtgacgcggctc
ggccggtcgtacaacctggcggctccggcctccggccgcatcatgtccggtggtatcgat
tcgacggcgctctacccgccgaagcggttcctcggtgcggcgcgcaacatcgagaacggt
ggttcgctcaccattctcgcgacggcgctggtggagaccggctcgatgatggacacggtc
atcttcgaggagttcaagggcaccggcaacgcggagctcaagctcgaccggaagatcgcg
gaccggcgtacgttcccggccatcgacatccacccgtcgggtacgcgtaaggaagagatc
ctgctcggcaaggaagagctggcgatcgtccacaagctgcgcaaggtgctgagctcgctg
gagtcctcggccgctctggacctcctgctcgaccggctcaagcagtcccggacgaacatc
gagttcctgatgcagatcgccaagtccacgcctggcgagtaa
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