Anoxybacter fermentans: BBF96_11820
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Entry
BBF96_11820 CDS
T05768
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aft
Anoxybacter fermentans
Pathway
aft03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aft00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBF96_11820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aft03021
]
BBF96_11820
03019 Messenger RNA biogenesis [BR:
aft03019
]
BBF96_11820
Transcription machinery [BR:
aft03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BBF96_11820
Messenger RNA biogenesis [BR:
aft03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBF96_11820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
NACHT
AAA
AAA_25
ATPase_2
Spore_III_AA
S1CSD-TOTE-2
Mor
AAA_24
ResIII
Motif
Other DBs
NCBI-ProteinID:
AZR74020
UniProt:
A0A3S9T0J1
LinkDB
All DBs
Position
complement(2610095..2611348)
Genome browser
AA seq
417 aa
AA seq
DB search
MLNLSELEAKNISVLHSIAKDLQISGYTRLKKKELIFEILKAETEKGGLIFAEGVLEIIQ
PEGYGFLRPSKYLPTPDDIYISASQIKRFGLRDGDVVSGQVRRPKENEKYLALLRVEAVN
YQDPELARERSHFEDLTPLYPQERLRLETYPHEVSTRLIDLVSPIGKGQRGLIVAPPKAG
KTVLLKKIANSISRNHPEVKLMVLLIDERPEEVTDMVRSVNAEVISSTFDEPPENHIKVA
ELVLEKAKRLVEHKYDVVILLDSITRLARAYNLTIPSSGRTLSGGLDPSAMHYPKRFFGA
ARNIEEGGSLTVIATALVETGSRMDDVIYEEFKGTGNMELHLDRRLAEQRLFPAVNIQRS
GTRKEELLLTEEELRIMWKFRKGISNLDPARVIETFIQQIKNTANNKELLAALEKIF
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaccttagtgagttggaagctaaaaacataagtgtacttcactctatagcaaaa
gacctgcagatttccggatatacccgactaaagaaaaaagaactgatctttgagatttta
aaggcagagactgaaaagggtggtttgatctttgcagagggagttttagagatcatccaa
cctgaggggtatggttttttgcgaccgtccaagtatttacctactcctgatgatatatac
atatcagcttcccagattaagcgttttggtttgcgagatggcgatgtggtttcggggcag
gtcagacgtccaaaggagaatgagaaatatctggctctattacgtgttgaagctgttaat
tatcaggaccctgaactggctcgtgaacgttctcattttgaagatttgaccccactttac
ccccaggaacgtcttcgtttagagacctatcctcatgaagtatctacccgtttgattgat
ctggtatctcccataggtaaagggcagagggggttgattgtagccccacccaaagctggt
aagactgttttactcaaaaaaattgctaatagtattagccgtaaccatccagaagtgaaa
ttaatggttctattaatcgatgagcgacctgaagaagtcacagatatggttcgttctgtc
aatgcagaggtaatttcttcaacttttgatgaaccgcctgaaaatcatattaaagtagct
gaactggtattggagaaggcaaaacgcctggttgagcataaatatgatgtggtaatttta
ttggatagtattacaaggctggcacgggcctacaatctgaccattccatctagcggtcga
actctctctggaggtcttgatccgtcggctatgcattatcccaaacgtttcttcggtgcg
gcccggaatattgaagaaggtgggagtttaacggttattgctacagctttagtggagacg
ggaagcaggatggatgatgtaatttatgaagagtttaagggaacaggtaatatggaatta
catttagatcgccgtctggcagaacagaggcttttcccggctgtgaatattcagcgttca
ggaacccgaaaagaagaattgcttctaacagaggaagaattgaggataatgtggaaattt
agaaaaggaattagcaatttagatcctgccagggtaattgaaacatttattcagcagatt
aaaaatactgctaataataaagagcttctggctgcactggagaaaattttctaa
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