Aythya fuligula (tufted duck): 116486614
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Entry
116486614 CDS
T07966
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116486614 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aful03021
]
116486614 (SMARCC1)
03036 Chromosome and associated proteins [BR:
aful03036
]
116486614 (SMARCC1)
Transcription machinery [BR:
aful03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116486614 (SMARCC1)
Chromosome and associated proteins [BR:
aful03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116486614 (SMARCC1)
PBAF complex
116486614 (SMARCC1)
GBAF(ncBAF) complex
116486614 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT_2
DUF919
Chromo
SpeFL
Motif
Other DBs
NCBI-GeneID:
116486614
NCBI-ProteinID:
XP_032038884
UniProt:
A0A6J3CLG5
LinkDB
All DBs
Position
2:1184590..1266609
Genome browser
AA seq
1125 aa
AA seq
DB search
MAAAVAAGGGGGGGGGAGPGAAAVAVAAAAAAAAAAGGGPGLAALSVARRKDGGPTGKFW
ESPDTVSQLDSVRVWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTK
LPAKCFMDFKAGGTLCHILGAAYKYKNEQGWRSTFPRHNRRRFDLQNPSRMDRNVEMFMN
IEKTLVQNNCLSRPTIYLIPDIELKLANKLKDIVKRHQGTVTEEKSKATHHVYPSPTSMD
DDEWLRPVMKKDKQVLVHWGFFPDSYDTWVHANEIDAEIEDPPIPEKPWKVHAKWILDTD
IFNEWMNEEDYEVDENRKSVSFRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPT
PVESRKKTGKKGQAALYGKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDS
ENTPVKGGTVADLDEQDEETVATGGKEDEDPNKGDQSRSIDPGEDNVTEQTNHIIIPSYA
SWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNL
TGDVCAVMRVHAFLEQWGLINYQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHIRTPQ
VPAAQQMLSFPEKNKEKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEAL
EMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPV
MSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTY
GLESSCIAGTGPDEPEKIDGAEEEKMETETDGQQSEKVENKVESEIEEGDKAQEGENERN
PEKEQDSEVTADTKTEEKETEENKENVDASKDKENEAGKKKVEHEISEGNVATAAAAALA
SAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQL
LTERQNFHMEQLKYAELRARQQMEQQHSQNPQQPHQHSGGPGMNPLGAPAHPGLLPHQQP
PPYPMMHHQMPPPHPPQPGQMPGPGSMMPGQPMPGRMMPSVAANIHPAGGGPPPPGMSPM
SGNLIGPRVPLAAPNGMYPPPAQPPPPAEGVTPPPAGAPPASAAP
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggtggcggcgggaggaggaggaggaggaggaggaggagcggggcccggg
gcggccgccgtggctgtggcggcggcagcggcggccgccgcggctgctgggggcggcccg
ggtttggcggcgctgtcggtggctcggcggaaggacggcggcccgacgggcaagttctgg
gagagccccgacaccgtgtcccagctcgactcggtgcgcgtctggctcgggaagcactac
aagaagtatgttcaagcagatgctcctaccaataaaacgctggctgggctggtggtgcag
ctgctgcaattccaggaagatgcctttggaaaacatgtcaccaatcctgccttcacaaag
cttcctgcaaagtgcttcatggatttcaaagctggaggtacattatgtcacattcttggt
gctgcttacaaatataagaatgaacagggctggagaagtacctttcctcgtcataatagg
cggagatttgacctgcagaatccatcccgaatggatcgaaacgtggagatgttcatgaac
attgagaaaacactagtgcagaacaactgtctgagtagaccaaccatctacctcattcca
gatatagaactgaagctggctaataaattaaaggatattgtcaaacgccaccagggaaca
gtaactgaagagaaatcaaaggctacccaccatgtttatccaagtcctacctcaatggat
gatgatgaatggctgagacctgtgatgaaaaaagacaagcaggtgctggtacactgggga
ttctttccagacagctatgacacttgggttcatgccaatgaaatagatgctgaaattgaa
gatcctccaattcctgaaaagccatggaaggttcatgccaagtggattttggacacagat
atattcaatgaatggatgaatgaagaggattatgaggtagacgagaacaggaaatcagtg
agttttcggcagagaatctccatgaaaaatgaagagcctgtacgtagtccagagaggaga
gacaggaaagcagcagcaagtacaaggaagagaaagcattctccttctccaccccccact
cctgtggagtcaagaaaaaagacagggaagaaaggacaagcagccttatatgggaaaagg
agagggcagaaagaagaagatgagcaagaagatcttacaaaggacatggaggatcccaca
ccggtacctaatatagaagaagtggtacttcccaaaaatgtgaacccaaagaaagacagt
gaaaacacacctgtgaaaggaggaacagtagcggacctcgatgaacaggatgaggagaca
gtggcaactggaggaaaggaagatgaagaccctaacaaaggcgatcaaagtcggtcaatt
gatccaggtgaagataacgtcacagaacagaccaaccacatcattattccaagctatgca
tcttggtttgactataactgtattcatgtgattgagcgtcgcgctcttcctgaattcttc
aacggaaaaaacaagtccaagactccagaaatatacctcgcttaccgcaacttcatgatt
gacacctatcgcttaaaccctcaggagtatttgaccagcactgcctgcagaaggaatctg
actggagatgtgtgtgctgtcatgagagtacatgcttttctggagcagtggggtctcatc
aactaccaggtggatccagaaagtcgtcccatggcaatgggccctcctcctactcctcac
ttcaacgtgctcgcagatacgccctccggcctgatgcctctccacatccgcactccccag
gttccagctgctcagcagatgctgagttttcctgagaaaaacaaagagaaacctactgat
ctacagaactttggacttcgcacagatatttactcaaaaaagactttagcaaagagtaaa
ggtgcaagtgctggaagagaatggacagaacaagagacgttgctgctattagaagctctg
gagatgtacaaagatgactggaacaaagtctcggagcacgttgggagccgtacccaggat
gaatgcattctccatttcctgaggcttcctatcgaagacccctatttggagaactccgat
gcatcccttggcccgctggcttaccagcccgttcctttcagccaatctggcaacccagtg
atgagtactgttgcttttctggcatcggtggtggatccccgggtggcatcagctgcagca
aaggctgcattagaggagttttctcgagtcagagaggaagtaccactggagctagttgaa
gctcacgtaaagaaagtacaagaagcagcacgagcctctgggaaggtggatccaacgtac
gggctggagagcagttgcattgctggaacaggtccagatgagccggagaaaatcgatgga
gctgaagaagaaaaaatggaaacagaaacagatgggcagcagtctgagaaggttgaaaac
aaagtggagagtgaaattgaggaaggtgataaagcacaagaaggagaaaacgagagaaac
ccagaaaaagaacaagatagcgaagtgactgcagacaccaagacagaagaaaaggagaca
gaagagaacaaggagaacgttgatgcaagcaaagacaaagaaaatgaggctgggaagaag
aaagtggaacatgaaatctcggaaggaaacgtagctacagctgcagctgctgctcttgcc
tcagctgccaccaaagcaaagcacctagcagcagtggaagaaagaaagatcaagtccctg
gttgcccttctggtggaaacacagatgaagaaactggagataaaacttcgccattttgag
gagctggaaaccattatggacagagagaaagaggcattagagcagcagagacagcagttg
ctgacagaacgccagaatttccacatggaacagctgaaatacgctgaattaagggctcgt
cagcaaatggagcagcagcacagtcaaaacccacagcaacctcaccagcactccggtggg
cctggaatgaacccgctcggggcaccagcacatccaggcctactgccccatcagcagccc
ccgccgtacccaatgatgcaccaccagatgccaccaccccacccaccacagccaggtcag
atgccagggcccggctcgatgatgcctgggcagcccatgccaggccggatgatgcccagc
gtggcggccaacatccacccggccggcggcggtcctcccccacccggcatgtcgccgatg
tcagggaacctcatcggaccccgcgttcctctagcagctcccaacggcatgtatcccccc
cctgcgcagccgcctccaccagcggaaggggtgaccccacctccggcaggagccccgccg
gcctcagcagctccctaa
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