Aythya fuligula (tufted duck): 116487069
Help
Entry
116487069 CDS
T07966
Symbol
XRN2
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03008
Ribosome biogenesis in eukaryotes
aful03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116487069 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
116487069 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aful03021
]
116487069 (XRN2)
03019 Messenger RNA biogenesis [BR:
aful03019
]
116487069 (XRN2)
03009 Ribosome biogenesis [BR:
aful03009
]
116487069 (XRN2)
03016 Transfer RNA biogenesis [BR:
aful03016
]
116487069 (XRN2)
Transcription machinery [BR:
aful03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116487069 (XRN2)
Messenger RNA biogenesis [BR:
aful03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
116487069 (XRN2)
Ribosome biogenesis [BR:
aful03009
]
Eukaryotic type
Pre-60S particles
RNases
116487069 (XRN2)
Transfer RNA biogenesis [BR:
aful03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
116487069 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
116487069
NCBI-ProteinID:
XP_032039537
UniProt:
A0A6J3CRK7
LinkDB
All DBs
Position
3:819396..869442
Genome browser
AA seq
947 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVSCVEEKAKECNGVKASIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPTSEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KKKRMKRDHPAFIPGGQFSPQALGNRSSPQAISNPRQAAYEMRMHDRPNSTTSSPNTSLN
SDGSPSPAGGIKRKAEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQS
YVEGLCWVLRYYYQGCASWNWYYPFHYAHLLLTFDGIADMPSDFEXGSKPFKPLEQLMGV
FPAASGNFLHQVWRKLMTDPESSIIDFYPEDFAIDLTGKKYAWQGVALLPFVDERRLRAA
LEEVYPDLTPEENRRNSLGGDVLFVGKHHPLCDFIVEQYKSKNTEPVDIPPELCHGIQGK
LTLNENAVLPDQTVESPVPMLRDLTQILHISFKDPQFDEDFVFKATVLPGAKKPPPVLKP
GDWEKNNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHTMPRERGMPGMYANAVPLGAYG
SPYSRPLLSGQQQIPKLLSNLRPQDTWRGPTPLFQQTPQRTAGAAPLLAWNRVLPSQSQY
QPGQYQGLGGPMSYPQRPEDRMDRGRQVYGPGRPYPLPPPSGRYSWN
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgccggccttcttccgatggctcagccgcaagtacccctccatcatcgtcagc
tgcgtggaggagaaggcaaaagaatgcaatggtgtcaaggcttcaatcgatacaagcaag
cctaaccctaatgaggttgagtttgataatctatatttggacatgaatggtataattcac
ccttgtacacatccagaagacaagccagcacctaaaaatgaagatgaaatgatggttgcg
atttttgagtatattgacaggattttcaacattgtacgaccaagacgacttctatacatg
gctatagatggagtagctcctcgtgcaaaaatgaatcaacagcggtcaagaagattcaga
gcatcaaaggagggcatggaagctgctgaagagaagcaaaaaataagacaagaaattctg
gcaaaaggtggcattcttcctccagaagaagtgaaagaaagatttgacagcaactgtatt
accccaggaactgagtttatggacaatcttgctaaatgtctccgctattacattgctgac
cgtttgaacagtgacccagggtggaaaaatttgacagtaattttgtctgatgctagtgct
cctggtgaaggagaacataaaatcatggattatattagaagacaaagagctcaaccaaac
catgacccgaatactcatcattgtctgtgtggggctgatgctgatctaattatgctcggt
ttagctacacatgaaccaaatttcaccataattagggaagagttcaaaccaaataaaccc
aagccatgtgctctttgtaaccagatgggtcacgaggttaaggattgtcaaggtttgcct
agagaaaaacaaggcaagcatgatcagtttgcagacagtcttcctacttctgaacaagaa
tttatcttcatccgattatgtgttttgcgagagtatttagaaagagaactcactatggcc
agcttacctttcacctttgattttgaaagaagtgttgacgactgggtcttcatgtgcttt
tttgttggaaatgactttcttcctcatctgccatctttagagatcagggagggagcaatt
gatcgcttggttaacatatataaaaatgtggtgcacaaaactgggggctacctcacagaa
agtggttttgtcaacctgcagcgagtccagatgatcatgttagctgttggagaagttgaa
gatagtatattcaaaaagagaaaagatgatgatgataacttcaaaagacggcaaaaagaa
aaaaaaaaaagaatgaagagggatcatcctgcttttattcccggtggtcagttttcccct
caagctctgggaaatcgatccagtcctcaagcaatcagtaaccctagacaagctgcctat
gagatgagaatgcatgacagaccgaattctacaacttcatctccaaataccagtctcaat
tctgatggctccccatccccggcaggaggaattaagcgaaaagctgaagatagtgacagt
gaacctgagccagaggataatatcaggttgtgggaaactggttggaagcaacgctactat
aaaaacaaatttgatgttgatgcatctgatgagaaatttcgtcgtaaagttgtacagtcc
tatgttgaagggctttgctgggttctcagatactattaccagggttgtgcctcctggaac
tggtattacccttttcactatgcccatttgcttctgacttttgatggtattgcagacatg
ccctcggattttgagnaaggctcaaagccgttcaagcctcttgaacaacttatgggagta
tttccagctgccagtggaaactttctgcaccaagtttggaggaagctcatgacagatccg
gaatcaagcataattgacttctaccctgaagattttgctattgacttgactggaaaaaaa
tatgcttggcaaggtgttgcattattgccgtttgttgatgagcgacgccttagagctgcc
ctggaagaagtctatcctgacctcactcccgaagaaaacagaagaaatagccttggtggt
gatgttctctttgttggaaaacaccatccactttgtgactttattgtagaacagtacaag
tccaaaaatacagagccagtggatataccgccagagttgtgtcatggaatccagggaaag
cttacactgaatgaaaatgctgttcttccagatcagaccgtggagtctcctgttccaatg
ctgcgtgatcttacacaaattctgcacatctctttcaaagatccacagtttgatgaagac
tttgtttttaaggctacagtgttacctggtgcaaagaaacctcctccagttctgaagcca
ggagactgggaaaaaaataacaatgatggcaggccttggagaccgcagcttggttttaat
cgagatagaaagccagtccacttggaccagtcagcgtttagaactttaggccatacaatg
ccaagggaaagagggatgccaggaatgtatgccaatgctgtacctcttggagcttatggg
agcccatacagcagaccgcttctgagtgggcagcagcagattcctaaattgttgtcaaat
cttagaccccaagatacttggcgaggccctacacctttgtttcaacagacaccacaaaga
actgctggagctgcccctctgcttgcctggaaccgcgtgctgccatcccaaagtcagtac
cagccgggtcagtaccaagggctgggcggaccaatgagttacccgcagagacctgaagat
cgaatggacaggggaagacaggtatatggccccgggaggccctacccgctgccacctccc
tcaggaagatacagctggaattag
DBGET
integrated database retrieval system
