Aythya fuligula (tufted duck): 116487116
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Entry
116487116 CDS
T07966
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116487116 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aful03400
]
116487116 (MSH2)
DNA repair and recombination proteins [BR:
aful03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116487116 (MSH2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
116487116
NCBI-ProteinID:
XP_032039620
UniProt:
A0A6J3CMF2
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Position
3:complement(16111722..16147629)
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AA seq
960 aa
AA seq
DB search
MRFLELISSPDVHKRVAAAAAMAVEAPREAAAAVWPEGAGAEAGFVRAVLSLPEKPDTTV
RFFERGDYYTAHGADARLAARELFRTRAVIRQLAGAAGNQKLESVVLSKMNFESFVRDLL
LVRHYRVEVYKNKAGSKSVKENDWYLAYKGSPGNLAQFEEVLFANNDMSMAIGVVGVKLS
TADGQRVVGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKL
RQVVQRGGILITDRKKAEFTTKDIVQDLNRLLKSKKEEQINSAALPEMEKQVAISSLAAI
IKFLELLSDESNFGQFELTTFDLSQYMVLDNAAVQALNLFQSSVENANTTQSLSGLLNKC
RTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVVDPELRQSLQEDLLRRFPDLNRLAKK
FQRQAATLQDCYRMYQAINQLPNVVKALEKHEGTHQMLLLAVFITPLNDIHSDFSKFLEM
IETTLDMDKVENHEFLVKASFDPNLTELREKMNELEENMQSFLQSAAKELGLEAGKSIKL
ESNSQFGHHFRITCKEEKVLRNNSKYKITDTQKNGVKFTNSKLSAVNEEYIKNREEYEEA
QDAIVKEIINIASGYAEPIQTMNDVIAHLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIV
LKGARHPCIEVQDEVAFIPNDITFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGC
FVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRG
TSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTM
LYRVKAGVCDQSFGIHVAELAAFPKHVIESAREKALQLEEFQNIGKSKESEGEPPSKKFY
REREEGEKIIQDFLSQVKALPLTDMSEEDIKIKLKQLRTDVLAKNNSFVNEIISRTKVTS
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgaggttccttgagctcatctcctctccagatgttcataaaagggtagcagcagcagca
gcaatggcggtggaggcgccgcgggaggcagcagcggcggtgtggccggagggcgcgggc
gccgaggcgggcttcgtgcgcgccgtgctgtcgctgcccgagaagcccgacaccaccgtg
cgcttcttcgagcgcggcgactactacacggcgcacggcgcggacgcgcggctggccgcc
agggagctcttccgcacccgcgccgtcatccggcagctggcgggcgccgcggggaatcag
aaacttgaaagtgtcgtgcttagtaaaatgaactttgaatcttttgtaagagatctgctc
ctggttcgtcattacagagttgaagtttacaagaataaagcagggagcaaatctgtcaaa
gaaaatgactggtatctagcatacaagggttctccgggaaatcttgcccagtttgaggaa
gttctctttgccaacaatgatatgtcaatggctattggggttgtgggggtgaagctgtct
actgctgatggacaaagagttgtaggagtagggtatgttgacactacgctgagaaaactg
agcgtctgtgaattcccagataatgatcagttctcaaaccttgaagctctactggttcag
ctgggacctaaggagtgcgtgctgccaggaggagagactgcaggagagatgggaaaactg
cgacaagtcgttcagagaggaggaatcctgattacagacagaaagaaggcagaattcaca
acaaaagatattgttcaggatctcaatcgcttgctaaaatcaaaaaaagaagaacaaatt
aatagtgcagcgttgccagagatggaaaaacaggtcgctatttcatctttggcagccatt
atcaagtttttagagttgctgtcggatgagtctaattttggacaatttgaactgactact
tttgatcttagtcaatacatggttctagataatgcagctgtccaagccctcaaccttttc
cagagttctgttgaaaatgctaatactacacagtccctatccggtttactaaataaatgc
agaacccctcaaggacaaagactggttaatcagtggatcaaacagccacttatggacaag
aatagaattgaagaaaggttgaatttggttgaagcttttgtggtagatccagaactacgt
cagagccttcaagaagatcttttacgtcgcttcccagatcttaaccggctggcaaagaaa
tttcagagacaagctgcaaccttacaggactgttatcgaatgtatcaggctattaatcaa
ctgcctaatgttgtaaaagcactagaaaaacacgaaggaactcaccagatgttgttgtta
gcagtgtttataacacctcttaatgatattcactctgacttctcaaagtttctggagatg
atagaaacaacattggatatggataaggtggagaatcatgaatttcttgtcaaggcttct
tttgatcctaacttgacagaattaagagaaaagatgaatgaactggaagaaaacatgcag
tccttcttacagagtgcagccaaagaattaggtttggaagctggcaaaagtattaaacta
gagtcaaattcacagttcggccatcactttcgaattacttgcaaggaggaaaaagtcctc
cggaacaattcaaaatacaagataactgatacacagaagaatggggtgaagtttactaac
agcaaattgagcgccgtcaatgaagaatacataaagaacagagaagaatatgaagaggct
caggatgcaattgttaaagaaatcattaatattgcttcaggttatgcagagccaatacag
actatgaatgatgtaatagctcatttagatgcaattgtcagttttgctcatgtgtcaaat
ggagcgccagtgccctatgtccgtcctgtcattttggaaaaaggacaaggaaggattgtg
ctgaaaggtgccaggcatccttgcattgaagtgcaagatgaagtggccttcatccccaat
gacattacgtttgagaagggcaagcagatgttccacattattactggccctaacatggga
ggaaaatcaacatacatccgacagactggggtgattgttcttatggcccaaattgggtgc
tttgtaccctgtgactctgcagaaataaccattgtggattgtatcctggctcgggtagga
gctggagacagtcagctgaaaggcgtgtctactttcatggctgaaatgttggaaactgct
tcaatccttaggacagcatctgaaaactccttaataatcattgatgaactgggaagagga
acttctacctacgatggctttggcttagcatgggctatttcagaatacattgctagcaaa
atctgtgctttctgtatgtttgctacacattttcatgaactgacagcacttgctgatcaa
gtgccaacagtaaataacctacacgttactgctctaaccagtgatgacacactgacaatg
ctttaccgtgtcaaggcaggtgtttgtgaccagagttttggaatacatgtagcagagttg
gcggctttcccaaaacatgtgatagaaagtgcaagagagaaagcactgcaactggaggag
tttcaaaacattggcaagtccaaggaatctgaaggagaaccaccgtccaagaaattctac
agagaaagagaggaaggtgaaaagatcattcaggattttcttagtcaagtgaaagcattg
cccctgacagatatgtcagaagaagacatcaaaatcaagctgaagcagctgagaactgat
gtgttggcaaagaacaacagttttgtgaatgaaataatttcccgaacaaaagttacatca
tga
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