Aythya fuligula (tufted duck): 116487555
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Entry
116487555 CDS
T07966
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
aful
Aythya fuligula (tufted duck)
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aful03041
]
116487555 (DDX1)
03016 Transfer RNA biogenesis [BR:
aful03016
]
116487555 (DDX1)
Enzymes [BR:
aful01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116487555 (DDX1)
Spliceosome [BR:
aful03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116487555 (DDX1)
Transfer RNA biogenesis [BR:
aful03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116487555 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
116487555
NCBI-ProteinID:
XP_032040443
UniProt:
A0A6J3CT12
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All DBs
Position
3:106145684..106165264
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AA seq
740 aa
AA seq
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MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDLDKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYIGLCKAPDGSVVKSQHAGNAQVVQTQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQIEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctcggaaatgggtgttatgcctgagatagctcaagcagtggaggagatg
gattggcttcttcctacagatattcaagcagaatctatcccattgatcctgggaggtggt
gatgtgcttatggctgcagaaacgggcagtggaaaaactggtgcttttagcattccagtt
atccagattgtttatgaaacactgaaggaccagatggaagggaaaaaagggaaagcaact
attaaaactggtggagcagtgctcaataaatggcagatgaacccatatgatagaggatca
gcttttgcaattggatcagatggtctgtgttgccaaagcagggaagtaaaagaatggcat
ggatgcagagcaactagaggcgtgactaaaggaaaatactactatgaagtgtcttgtcat
gaccaaggcttgtgcagagttggttggtcaactatgcaggcatcgctagatttgggcact
gataaatttggctttggatttggtggcactggtaagaaatctcacaacaagcaatttgac
agctatggtgaggaattcactatgcatgatacaattggatgttatctagatttagataaa
ggacaaataaaattttccaaaaatgggaaagaccttggccttgcgtttgaaatcccacca
cacataaggaaccaggcactctttgcagcttgtgtgctgaagaatgctgaattaaaattc
aattttggcgaagaagacttcaagtttcccccaaaagatggctatattggactctgcaag
gctcccgatggtagtgttgtaaaatcacaacatgcaggaaatgcacaagtggttcaaaca
cagaaccttccaaatgctccaaaagcattgattgttgaaccatcgagagaactagcagaa
caaactttgaacaatgtgaagcagttcaaaaaatatgttgataatcccaaattaagggaa
ctgctgattattggtggggttgctgcaagagatcaactctctgtgctggaacaaggagtg
gatattgttgttggaactcctggaagactggatgacctggtctcaacaggaaagcttaat
ttatctcaagttagattcctcgttctggatgaagctgatggccttcttctccaaggttat
tcagatttcataaacaggatccatagtcaaattcctcagatcacttcagatggaaagcga
cttcaggtgatcgtgtgttctgcaacactgcattcttttgatgtgaaaaagctgtctgaa
aagatcatgcattttcccacctgggttgatctgaaaggagaagattctgtccccgaaact
gtacaccatgtagttgtgcctgttaatccaaaagctgataaactctgggaaagacttggc
aagaatcatatcagaactgatgaagtacatgcaaaagacaatacacgtcctggtgctaac
actccagaaatgtggtctgaagctatcaaaattctgaagggagagtacactgttcgggca
atcaaagagcacaagatggaccaagccattattttctgcaggacaaaaatagattgtgat
aatatggagcagtacttcatccaacagggcggaggccctgataggaagggacatcagttc
tcatgtgtctgtctgcatggtgacagaaaacctcaagaaagaaaacagaacctggagaga
tttaagaggggagatgtccgtttcttgatctgcacggacgttgcagctagaggaattgat
attcatggtgttccctatgttatcaacgtcacgctccctgatgaaaaacagaactatgtt
caccgaattgggagagtaggccgagctgaaaggatgggtctggcaatctcccttgtggca
aaagaaaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaaggatgttacaat
actagactgaaggaagaaggtggttgtactatatggtacaatgagatgcagttgttgggg
gagattgaagaacacttaaactgcactattgcccaaattgaaccagatataaaagtgcca
gtagatgactttgatgggaaggttacatatgggcagaaaagagcccttggtggtggactc
tataaaggccatgtggatattctggcacctacagtacaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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