Aythya fuligula (tufted duck): 116487976
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Entry
116487976 CDS
T07966
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116487976 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aful03400
]
116487976 (MSH6)
DNA repair and recombination proteins [BR:
aful03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116487976 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Autoind_bind
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
116487976
NCBI-ProteinID:
XP_032041130
UniProt:
A0A6J3CS53
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Position
3:complement(15978567..15990806)
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AA seq
1346 aa
AA seq
DB search
MSRQSTLLSFFPRARAAAPPPAATPAAGGVETRRRAAREQEQEGDGRQAAAVPPRPTAEK
GRRHGAAAGPSCDYSPGDLVWAKMEGYPWWPCLIYNHPTEGTILRGKGKSARIHVQFFDD
SPTRGWVSVKYLRPYKGSSDGETQKGGMFYSTKPEIKKAMELADSAMSKDKTKRLELAVC
SEPSDTEEEEEEEMEQSNESASGDSDDPNSEEDVKGNKRLKSKGSATKAKRRRVLDSDSD
HDGSDVEFKPDVKEAASSEEASSGVDENESTDAETDEESIAESPIKVSSKRKRRDVSKPS
KRSSLENGRPEAPKRAATVSLEAKSKLTSFAAPDNFESQANACSGGTGGFAAWEHEKLDW
LQEGKKKDAHRRRQNDPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVIFYKVGKF
YELYHMDAVTGVNELGLIFMKGSWAHSGFPETAFGRFSDVLVQKGYKIARVEQTETPEMM
EVRCKSMAHPTKFDRVVRREICRIITKGTQTYSILDCDPSENHNKYLLCVKEKEDSSGQR
VYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEKGNLSVDTQKILKGSLV
CCIQEGLLPGSQFWNASKTLKVLLEEEYFKEKQNSENGCSLPSVIKSLTSETDSLGLTPG
ENSELALSALGGCVFYLKKCLIDQELLSLANFEEYIPVDIDTAKTVSSSSFFAKTDRRMV
LDGVTLMNLEVLRNGTNGTTEGTLLERIDTCCTPFGKRLLKQWLCAPLCNPKSINDRLDA
VEDLLAVPDKMSEVSEHLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKK
IADFLSALEGFKVMNEIVDVMEEIAADFKSKVLKQLVTRKAKNPDGRFPDLSAELKRWDT
AFDHNQARKTGVITPKAGFDPDYDKALQDIKAVEEDLHAYLDKQRKLLGFKSVLYWGAGK
NRYQMEIPESVISRNLPEEYELKSTRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMR
RLFYNFDKNSKDWQAAVECIAVLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKN
SRHPCITKTFFGDDFIPNDIMIGSKDEDSGSEASCVLVTGPNMGGKSTLMRQAGLLVIMA
QLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDE
LGRGTATFDGTAIASAVVRELAEKIRCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENE
NEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEFEKTMISLRLFR
YLCLVVDDATSDANAVQKLITMINQL
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcaccctgctcagcttcttccccagggcgcgggcggcggcgccgcca
ccggcagcgacaccggcagcgggcggcgtggagacgcggcgccgcgctgcacgggagcag
gagcaggagggggatggccgccaggccgccgccgtccccccgcgccccacggccgagaag
gggcggcggcacggggcggccgcgggcccctcctgtgattattcgcccggtgacttagtc
tgggccaagatggaaggttacccgtggtggccgtgtctcatatacaaccatcccaccgag
gggaccatcctccgggggaaggggaaatccgcccggatccacgtgcagttctttgatgac
agtcccacaaggggctgggtcagcgtgaaatacctgaggccatataaaggttcatcagat
ggtgagacacagaagggaggtatgttttatagcacaaaacccgaaattaaaaaagccatg
gagctggctgacagcgcaatgagtaaagataaaactaaacgacttgagctggcagtatgc
agcgagccttcggacactgaagaggaggaggaggaggaaatggagcaatcaaatgaaagt
gcatcaggtgacagcgatgacccgaacagtgaggaggatgtgaagggcaacaagcggtta
aagagcaagggaagtgccacaaaagccaaaagaagaagggtgttggattctgacagtgat
catgatggttccgatgtggagttcaagcctgatgtgaaagaagcagcaagcagcgaggaa
gctagtagcggggtggatgaaaacgaatctactgacgcagagaccgatgaagagagcatt
gcggaaagtcccataaaagtctcctctaaacgaaagagaagagacgtgagcaagccttct
aaaaggagcagcttagaaaatgggcgccctgaagcacccaagagagcagcaacagtttcc
ttggaggccaagtctaagctgacatcatttgcagcacctgataattttgagtctcaagca
aatgcttgcagtggaggaactggtggctttgcagcatgggaacatgagaaacttgactgg
cttcaggaagggaagaagaaagatgcacacaggaggcgacagaatgaccctgattatgac
ccatgtactctgtatgttcctgaagactatctcaacaaatgtaccccagggatgcggaga
tggtggcagctgaaaagtcaaaacttcgatgcagtgattttctacaaagttggaaagttc
tacgagctgtatcacatggatgcagtcactggtgtgaatgagttgggcctgatatttatg
aaaggctcttgggctcattcgggttttccagaaactgcgtttggcaggttctctgacgtt
ctagtgcagaagggctacaagatagcccgtgttgagcaaacagaaactcctgaaatgatg
gaagtgcgctgcaagtcaatggcccacccaacaaagtttgacagggtcgtgcgtcgagaa
atctgcagaatcattaccaaaggcactcagacctacagcattctggattgtgatccatcg
gagaaccataacaaatacctgctgtgtgttaaggagaaagaagactcctccggacagcgt
gtttatggggtctgctttgttgacacatcagttggaaagttttacgtaggccagttctca
gatgaccggcactgttcaaggtttaggactttagtagcacattacactcccgtgcaggta
ctgtttgagaaggggaacctgtctgtggacacacagaaaatactgaaaggctcacttgtg
tgttgcattcaggaagggctgcttcctggctcccagttctggaacgcatctaaaacacta
aaagttcttcttgaagaagagtatttcaaggagaaacagaactctgaaaatgggtgttct
ctgccctccgtgatcaagtctctgacttcagagactgactctctgggattaactcctggt
gaaaacagtgaattagccttgtcagctcttggggggtgtgtcttctatctgaaaaaatgt
ctgattgatcaggagctgctatcgctggcaaactttgaggagtacatccctgtggatatc
gataccgcaaaaacagtgagttccagtagcttctttgccaaaactgaccggcggatggtg
ctggatggagtcacccttatgaacttggaagttctgcggaatggaaccaacggaaccacg
gaaggaactctgctggaaaggatcgatacctgctgtacgccctttgggaagcggctcctg
aaacagtggctctgtgctccgctctgtaaccccaaatccatcaatgatcgtttagatgct
gtcgaggaccttctggcagtgccagataaaatgtctgaagttagcgagcacctgaagaaa
cttcctgacctggaaaggctgctcagcaaaattcacagtattggatcaccgctgaaaagt
cagaaccatcctgacagcagggccatcttttatgaagaaatcaaatacagcaagaaaaaa
attgctgactttttgtctgcacttgaagggtttaaagtaatgaatgaaattgtcgatgtc
atggaagaaattgctgctgacttcaaatctaaagtacttaagcagttagtcacacgcaaa
gccaaaaatccagatggacgctttccagacttgagcgcggagcttaaaaggtgggatacg
gcttttgatcacaaccaggctcgaaagacaggagtgatcactccaaaggctggttttgac
cccgattatgacaaagcactgcaggatattaaagctgttgaggaagatctccacgcatac
ctagataagcagcgcaagctgcttggcttcaaatctgtgctgtactggggggccggcaaa
aatcggtaccagatggaaataccagaaagcgtgatatcacgtaatctacctgaagaatat
gagctgaagtcaaccaggaaggggtataaacgttactggaccaaagagattgagaagatg
ctggctgccatggtgaatgccgaggagcggagagatgcggcgctgaaggactgcatgagg
cgcctgttctacaacttcgataaaaacagcaaggactggcaggcagctgtggagtgcatc
gccgtgttagatgtcttgatgtcccttgctaactacagtcaagatggtgatggacctttg
tgccgacctgtaattctactgcctgtggatagcgctcctcccttcctggaacttaaaaat
tcacgccatccatgcattacaaaaaccttctttggggacgattttattcctaatgacatc
atgataggcagcaaagatgaagacagtggtagcgaagcttcctgtgtattagtaactggc
ccaaatatgggtggcaaatcaacactcatgagacaggctggtctcctggttataatggct
cagctgggatgctacgtacctgctgaagtctgcaggcttacaccaattgacagagtattt
acaagactcggtgcctcagacagaattatgtcaggtgaaagtaccttctttgttgaacta
agcgagacttcgagcattctccagcatgcaacagagcactcccttgttcttgtggatgaa
cttggtagaggcacggctacttttgacggaacagctatagcaagtgcagttgttagagaa
ctcgcagagaaaatcaggtgtcgaaccctgttctccacacactaccactccctagtagag
gattattcacagaacgttgctgtgcggcttggtcacatggcatgtatggttgaaaatgag
aatgaagatccaagccaggaaactattacattcctgtataaattcatcgaaggagcgtgt
ccaaaaagctatggcttcaatgcagcaagacttgctgatattccagaggaagttattcag
aaggggcacagaaaagcaaaagagtttgaaaaaacaatgatatcactgagactgtttagg
tatctgtgcctggtggtagatgatgcaacaagtgatgcaaatgcagttcagaaacttatc
actatgatcaatcagctttaa
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