Aythya fuligula (tufted duck): 116488144
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Entry
116488144 CDS
T07966
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
aful
Aythya fuligula (tufted duck)
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aful03021
]
116488144 (SCAF8)
03041 Spliceosome [BR:
aful03041
]
116488144 (SCAF8)
Transcription machinery [BR:
aful03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116488144 (SCAF8)
Spliceosome [BR:
aful03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
116488144 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
DUF3525
Motif
Other DBs
NCBI-GeneID:
116488144
NCBI-ProteinID:
XP_032041391
UniProt:
A0A6J3CQN7
LinkDB
All DBs
Position
3:53421832..53577764
Genome browser
AA seq
1358 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVVQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLTPLEQSVSFNKKLMDRFDFGEEPEQNEEPKKETPTSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPNEENQEGNFGSEHSASPSQGSSQQQFLEA
ETNVDDSMDIQQQDMDIDEVQDVAEEEIFEQEEKKSTVRSRSRSRSRSRSRSPRKRRSRS
RSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTT
LWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYK
IGSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTE
WETARNSEPSKETTQTTQTTTVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAF
PVTMSVPPPGYSAIPPPPFLRASFNPSQPPPGFMPPPVPPVVPPPVVPPPVVPPVVPTPL
VQPPLPITQETMKDVPFSSLVLPVGTVTSNLATPTLSAGSVFNPLPISKPESDEKGSHLT
DLQISSSENNRAVQSDVSSSSGLVGGVQPPSVSSSSGLTGEGQPPSVSSSSGLAGGVQPP
IVSSTSGLVGGVQPPTVSSSSGLAGGVQLPTVSSSSSLAGGVPPTSVSSSSGLMAGVQPP
NVSSSSGLLAGVHPPSISSSPGLLPGMQPPNVSSSSGVLAGVQPPSVSNNSGLLIMPPPN
VSSSSGLMGVPPPNISSSSGLLAMQHPAGVQNMPHLNISNQRMPGMPLIDIRPGLMPHSP
GPRFPLMQPGVPPQRSIPPPAILDPALHPPPRGPFPPGDLFNQTERPFGAPGRQNIDSIS
NPEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDPVGRPPIDPREGVGRPPV
DGREHFARPHIDMRENFGRPGIDNIGRREHFAFNSDKHWGQRGDYDEREHHAFPIYGGPK
GFHEDRERFRHVNYRFDSRSGPNWNRGFEPDAHRDFDDRRRPWERQRDRDDRDFNFCREI
NGNRFGRDRMSNNWIPPPHPRVFEYFDGAAPQRKADNMPQVNGENTETESQPPTAQVQDE
PELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagcctttaacagcgagttgtactcgctaaatgattacaagccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggcgataaagttctac
aagcatgttgtacagagcgttgagaaattcattcaaaagtgtaaaccagaatacaaggtg
cctggcctatatgtcattgactccattgtgagacagtcccggcatcagtttgggcaagag
aaggatgtatttgctccaagattcagcaataacattatcagtactttccagaatctgtat
cgttgtcctggggatgacaagagtaaaattgttagagtgctaaacttatggcagaagaat
aatgtgttcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
ccagttgtgactcccgtcttgcccagcactacagctgctatgagcaacaatacaccagga
acacctgtgactccagttactccagccaatgtggtgcagagtttacccgatccttgggta
tctcagattgctaatacagatacgcttgctgctgtagcacagattttacagagtccccaa
ggccaacagcttcagcagttgatacagacgctgcagatacagcagcagaaacctcagcct
tcgctacttcaagccctggatgctggtcttgttgttcagttacaggccctaaccgcacaa
cttacagctgcagctgctgctgccaacacacttactccactggaacaaagtgtctctttt
aataagaagctgatggacaggtttgacttcggggaagaacctgaacaaaatgaagagcct
aaaaaggaaactcctacttcccaattgcctttagtaccagaatctgtgaacaactcgctt
tttcaccagctagctgaacagctacagcaacaaaatttagaacatctgcgacaacagctt
ttggagcaacagcagcctcaaaaggcaagccctaatgaggaaaatcaagaaggaaatttt
ggttcagagcattctgcatcaccatcacaagggagcagtcaacaacagtttttagaagca
gaaacaaatgtagatgattcaatggatattcagcaacaggacatggatatagatgaagta
caggacgttgctgaagaagagatttttgaacaagaagaaaagaaatcaactgttcgttca
agatcaagatctcgttcaagatctcgttcaagatcaccaagaaaacgaaggtctagatca
cgatctggttctcgtaagcgtaaacacagaaaacgttcacgctcaagatcaagagaaagg
aagagaaagtcatctcgatcatattccagtgagagaagggctagagaaagggaaaaagaa
cgtcagaagaaaggattgcctcctatacggtcaaaaacactaagcgtttgcagtactact
ctttgggtaggtcaagtagacaagaaggctacgcagcaagatttgactaacttgtttgaa
gaatttggacagatagaatctattaatatgattcccccaaggggttgtgcttacgtctgc
atggttcatagacaagatgcatatcgtgctcttcagaaacttagttctgggtcctataaa
attggatctaaaattattaagattgcctgggctttgaataaaggtgtgaaaacagagtac
aagcaattctgggatgtggatctgggagtttcgtatattccttgggagaaagtaaaattg
gatgatttggagggatttgctgaaggtggaatgattgaccaggagacagtaaatacagaa
tgggaaacagccaggaactcagaaccttctaaagaaactactcaaactacgcagactact
acagttgataagagcacagttatcacaacacagacagaagcttacacacagccagtcact
atgctgcagattccagtagctccagctgtgcctgctgttagcttagttccacctgcgttt
cctgtcacaatgtctgtccctcctcctggttatagcgcaattcctcctccacccttcttg
cgagcaagtttcaacccttcacagccacctccaggttttatgcctcccccagtacctcct
gttgtcccacctcctgttgtcccacctcctgttgtcccaccggttgttccaacacctcta
gtacagcctccattaccaattacacaagagacgatgaaggatgttccttttagtagcctc
gttttaccagttggcacagttacaagcaacctagctactccaacgttgtctgctggaagt
gtttttaatcctctgccaatcagcaaaccagaatcagatgaaaagggatcacatcttaca
gaccttcagatttcttccagtgaaaacaatagagctgtgcaaagtgatgtctcaagtagc
tctggacttgttggaggagtgcagccacccagtgtttcaagcagttctgggcttactgga
gaaggccagccacctagtgtctcaagtagctctggacttgcaggaggagtacagccaccc
attgtctcaagcacctctggacttgtaggaggagtgcaaccaccaactgtttcaagcagt
tctggtcttgcaggaggagtgcagctacccactgtctccagtagctcttcccttgcagga
ggagttccgccaactagtgtctcaagtagctctggacttatggctggagtgcaaccacca
aatgtctcaagtagctcagggcttctagctggagtgcatccacccagcatctcaagtagc
cctggccttctaccaggaatgcagccacccaatgtctcaagcagctcaggagttctggca
ggagtgcagccaccgagtgtctcaaacaactctggtcttctcataatgccaccacccaat
gtttcgagtagttctggacttatgggagtgccaccaccaaatatttcaagcagttctgga
cttctggcaatgcagcatccagctggtgttcaaaatatgcctcatttaaacataagtaat
caaaggatgccaggaatgcctctcatagatatccgtccaggcctgatgccccactcacct
ggaccaaggtttccattaatgcagccaggagtgccaccacagcgtagtattcctcctcca
gcaatccttgatccagctcttcacccaccacctcgaggtccttttcctccaggagatctt
tttaatcaaacagaaagaccttttggagcaccaggaagacaaaatattgatagcatttct
aatccagagaaaagactaccacttggaggggataacatacagcaggaaggagacagagat
tatcgttttcctccagtagaaaatcgagataatcttaatagaccatccccagtggatgtc
agagatcctgttggacgaccaccaattgatccaagagagggtgtaggaaggcctccagta
gatggaagagaacattttgcaagaccacatatagacatgagagaaaattttggaagacca
ggtatagataatattggccgaagagagcattttgctttcaattcagacaagcactgggga
cagagaggagattatgatgaaagagagcatcatgccttccctatttatggtggccctaaa
ggcttccatgaagacagagagagatttcggcatgtaaactatagatttgatagtagaagt
ggtcccaattggaatagaggatttgaaccagatgctcacagagattttgatgaccgcaga
agaccctgggaaagacagagggatagggatgacagagattttaacttttgcagagaaatt
aacgggaacaggtttggaagagacagaatgtcaaacaactggatcccccctccacatcca
cgggtttttgaatattttgatggggctgctccccaacgcaaagctgataatatgccccag
gtaaacggtgaaaatacagagacagaaagtcagccaccaactgcacaggtgcaggacgaa
ccagaactttatgaaaaactgacctcttcagtcgagataaacaaagagaagagtgacaca
gaagctgatatagaaagtgaaccagtggtagaaagcacagaaactgaggggacataa
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