Aythya fuligula (tufted duck): 116488307
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Entry
116488307 CDS
T07966
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116488307 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aful03021
]
116488307 (TAF5L)
03036 Chromosome and associated proteins [BR:
aful03036
]
116488307 (TAF5L)
Transcription machinery [BR:
aful03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116488307 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
116488307 (TAF5L)
Chromosome and associated proteins [BR:
aful03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116488307 (TAF5L)
STAGA complex
116488307 (TAF5L)
TFTC complex
116488307 (TAF5L)
SAGA complex
116488307 (TAF5L)
SLIK complex
116488307 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
WD_LRWD1
eIF2A
Ge1_WD40
Nbas_N
Motif
Other DBs
NCBI-GeneID:
116488307
NCBI-ProteinID:
XP_032041690
UniProt:
A0A6J3CTS6
LinkDB
All DBs
Position
3:complement(42420001..42434070)
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSESGCANVVSA
APCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQNGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTMTIQDILSNLKLRAFLDNKYVVRLQEDSYNYLLRYLQ
SDNNNALCKVLTLNIHLDVQPAKRTDYQLYAGGSSSRSESNGLEPSEVPAAILQNEAALD
LLQDSIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPNSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSRIRLACDILDEEEEEDDSAGTEMKILRGHCGPVYSTRFLSDSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPCSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCNAPADGSSSELVGVYTGQMNNVLSVQFMACNLLLVTGIAQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcgtacgcacagaacagattcagatggcggtgtcctgctacctcaagcgccgt
cagtatgtggactcagaaggtcccctaaaacaagggctgaggctgtgtcagactgctgaa
gagatggcagctaatctcacagtccaatctgaatctggttgtgccaacgttgtgtctgca
gctccctgcctggcagagccacagcaatatgaagtacagtttggacgcttacgcaatttt
ctcacagattcagattctcagcacagccatgaagtgatgcctcttctgtatcccctcttc
gtctacctccacctgaacatggtccagaatggcctgaaaagcacagtggacagtttttac
agccgcttccatggcatgttcttgcagaacgccagccagaaggatatcattgagcagttg
cagactaccatgactattcaagatatcctgtccaacttgaagctccgggcttttctggac
aacaagtacgtcgtccgccttcaagaggacagctacaactaccttcttcgctacctccaa
agtgacaacaacaacgccctgtgcaaagtcctgaccctgaacatccacctggacgtgcag
cccgccaagaggaccgactaccagctctacgccggtgggagctcctcgcgcagcgagagc
aacgggctggagcccagcgaggtgccggccgccatcctgcagaacgaggcggcgctggac
ctactgcaggacagcatcaagcgcgtcaaggacgggcccccttccctaaccaccatctgt
ttctatgccttctataacacggagcagttgctgaacacggccgagatctcgcccaacagc
aagctgctcgctgccggcttcgataactcgtgcgtcaagctgtggagcctgcgctccagg
aagttaaaatctgagccccacctcgtcgatgtgtcccgcatccgcctggcttgtgacatc
ctggatgaggaggaggaagaggatgacagcgccggcacagaaatgaagatcctgcgagga
cactgcgggcctgtgtacagcacgaggttcctttcggacagctcgggactcttgtcttgc
tctgaggacatgtccatcagatactgggacctgggaagctttacaaacactgtgttgtac
caaggccatgcctaccccgtctgggatttggacatcagcccctgcagcctgtacttcgcc
agcggctcccacgaccgcacggcgaggctctggtcgttcgatcggacgtacccgctgcgg
atatacgcgggccacttggcggacgtggactgcgtcaagttccaccccaactccaactac
ttggccacgggctccaccgacaaaaccgtgcgcttgtggagcacccagcagggcaactcg
gtgcgcctcttcaccgggcaccgcggccccgtgctggcgctcgccttctcccccaacggt
aagtacctggcctcggcgggcgaagaccagcggctaaagctgtgggacttggcttcggga
accctctacaaagaactgagggggcacacggacaacataaccagccttactttcagcccc
gacagcagtttaatcgcttcggcctccatggacaactccgtgcgggtctgggacatccgg
aacacgtactgcaacgcccctgccgatgggtcttccagtgagctggttggtgtatatacc
gggcagatgaataacgtactgagcgtgcagtttatggcctgtaaccttcttctagtgact
ggaattgcacaagaaaatcaggaacattaa
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